Team:Wageningen UR

From 2011.igem.org

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(Welcome to our Wiki!)
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<html>
 
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<head>
 
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<body>
 
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<script>
 
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//** Smooth Navigational Menu- By Dynamic Drive DHTML code library: http://www.dynamicdrive.com
 
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//** Script Download/ instructions page: http://www.dynamicdrive.com/dynamicindex1/ddlevelsmenu/
 
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//** Menu created: Nov 12, 2008
 
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//** Dec 12th, 08" (v1.01): Fixed Shadow issue when multiple LIs within the same UL (level) contain sub menus: http://www.dynamicdrive.com/forums/showthread.php?t=39177&highlight=smooth
 
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//** Feb 11th, 09" (v1.02): The currently active main menu item (LI A) now gets a CSS class of ".selected", including sub menu items.
 
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//** May 1st, 09" (v1.3):
 
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//** 1) Now supports vertical (side bar) menu mode- set "orientation" to 'v'
 
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//** 2) In IE6, shadows are now always disabled
 
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//** July 27th, 09" (v1.31): Fixed bug so shadows can be disabled if desired.
 
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//** Feb 2nd, 10" (v1.4): Adds ability to specify delay before sub menus appear and disappear, respectively. See showhidedelay variable below
 
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//** Dec 17th, 10" (v1.5): Updated menu shadow to use CSS3 box shadows when the browser is FF3.5+, IE9+, Opera9.5+, or Safari3+/Chrome. Only .js file changed.
 
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var ddsmoothmenu={
 
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//Specify full URL to down and right arrow images (23 is padding-right added to top level LIs with drop downs):
 
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arrowimages: {down:['downarrowclass', 'down.gif', 23], right:['rightarrowclass', 'right.gif']},
 
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transition: {overtime:300, outtime:300}, //duration of slide in/ out animation, in milliseconds
 
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shadow: {enable:true, offsetx:5, offsety:5}, //enable shadow?
 
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showhidedelay: {showdelay: 100, hidedelay: 200}, //set delay in milliseconds before sub menus appear and disappear, respectively
 
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///////Stop configuring beyond here///////////////////////////
 
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detectwebkit: navigator.userAgent.toLowerCase().indexOf("applewebkit")!=-1, //detect WebKit browsers (Safari, Chrome etc)
 
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detectie6: document.all && !window.XMLHttpRequest,
 
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css3support: window.msPerformance || (!document.all && document.querySelector), //detect browsers that support CSS3 box shadows (ie9+ or FF3.5+, Safari3+, Chrome etc)
 
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getajaxmenu:function($, setting){ //function to fetch external page containing the panel DIVs
 
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var $menucontainer=$('#'+setting.contentsource[0]) //reference empty div on page that will hold menu
 
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$menucontainer.html("Loading Menu...")
 
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$.ajax({
 
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url: setting.contentsource[1], //path to external menu file
 
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async: true,
 
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error:function(ajaxrequest){
 
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$menucontainer.html('Error fetching content. Server Response: '+ajaxrequest.responseText)
 
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},
 
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success:function(content){
 
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$menucontainer.html(content)
 
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ddsmoothmenu.buildmenu($, setting)
 
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}
 
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})
 
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},
 
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buildmenu:function($, setting){
 
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var smoothmenu=ddsmoothmenu
 
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var $mainmenu=$("#"+setting.mainmenuid+">ul") //reference main menu UL
 
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$mainmenu.parent().get(0).className=setting.classname || "ddsmoothmenu"
 
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var $headers=$mainmenu.find("ul").parent()
 
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$headers.hover(
 
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function(e){
 
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$(this).children('a:eq(0)').addClass('selected')
 
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},
 
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function(e){
 
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$(this).children('a:eq(0)').removeClass('selected')
 
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}
 
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)
 
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$headers.each(function(i){ //loop through each LI header
 
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var $curobj=$(this).css({zIndex: 100-i}) //reference current LI header
 
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var $subul=$(this).find('ul:eq(0)').css({display:'block'})
 
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$subul.data('timers', {})
 
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this._dimensions={w:this.offsetWidth, h:this.offsetHeight, subulw:$subul.outerWidth(), subulh:$subul.outerHeight()}
 
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this.istopheader=$curobj.parents("ul").length==1? true : false //is top level header?
 
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$subul.css({top:this.istopheader && setting.orientation!='v'? this._dimensions.h+"px" : 0})
 
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$curobj.children("a:eq(0)").css(this.istopheader? {paddingRight: smoothmenu.arrowimages.down[2]} : {}).append( //add arrow images
 
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'<img src="'+ (this.istopheader && setting.orientation!='v'? smoothmenu.arrowimages.down[1] : smoothmenu.arrowimages.right[1])
 
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+'" class="' + (this.istopheader && setting.orientation!='v'? smoothmenu.arrowimages.down[0] : smoothmenu.arrowimages.right[0])
 
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+ '" style="border:0;" />'
 
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)
 
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if (smoothmenu.shadow.enable && !smoothmenu.css3support){ //if shadows enabled and browser doesn't support CSS3 box shadows
 
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this._shadowoffset={x:(this.istopheader?$subul.offset().left+smoothmenu.shadow.offsetx : this._dimensions.w), y:(this.istopheader? $subul.offset().top+smoothmenu.shadow.offsety : $curobj.position().top)} //store this shadow's offsets
 
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if (this.istopheader)
 
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$parentshadow=$(document.body)
 
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else{
 
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var $parentLi=$curobj.parents("li:eq(0)")
 
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$parentshadow=$parentLi.get(0).$shadow
 
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}
 
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this.$shadow=$('<div class="ddshadow'+(this.istopheader? ' toplevelshadow' : '')+'"></div>').prependTo($parentshadow).css({left:this._shadowoffset.x+'px', top:this._shadowoffset.y+'px'})  //insert shadow DIV and set it to parent node for the next shadow div
 
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}
 
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$curobj.hover(
 
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function(e){
 
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var $targetul=$subul //reference UL to reveal
 
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var header=$curobj.get(0) //reference header LI as DOM object
 
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clearTimeout($targetul.data('timers').hidetimer)
 
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$targetul.data('timers').showtimer=setTimeout(function(){
 
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header._offsets={left:$curobj.offset().left, top:$curobj.offset().top}
 
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var menuleft=header.istopheader && setting.orientation!='v'? 0 : header._dimensions.w
 
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menuleft=(header._offsets.left+menuleft+header._dimensions.subulw>$(window).width())? (header.istopheader && setting.orientation!='v'? -header._dimensions.subulw+header._dimensions.w : -header._dimensions.w) : menuleft //calculate this sub menu's offsets from its parent
 
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if ($targetul.queue().length<=1){ //if 1 or less queued animations
 
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$targetul.css({left:menuleft+"px", width:header._dimensions.subulw+'px'}).animate({height:'show',opacity:'show'}, ddsmoothmenu.transition.overtime)
 
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if (smoothmenu.shadow.enable && !smoothmenu.css3support){
 
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var shadowleft=header.istopheader? $targetul.offset().left+ddsmoothmenu.shadow.offsetx : menuleft
 
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var shadowtop=header.istopheader?$targetul.offset().top+smoothmenu.shadow.offsety : header._shadowoffset.y
 
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if (!header.istopheader && ddsmoothmenu.detectwebkit){ //in WebKit browsers, restore shadow's opacity to full
 
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header.$shadow.css({opacity:1})
 
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}
 
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header.$shadow.css({overflow:'', width:header._dimensions.subulw+'px', left:shadowleft+'px', top:shadowtop+'px'}).animate({height:header._dimensions.subulh+'px'}, ddsmoothmenu.transition.overtime)
 
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}
 
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}
 
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}, ddsmoothmenu.showhidedelay.showdelay)
 
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},
 
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function(e){
 
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var $targetul=$subul
 
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var header=$curobj.get(0)
 
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clearTimeout($targetul.data('timers').showtimer)
 
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$targetul.data('timers').hidetimer=setTimeout(function(){
 
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$targetul.animate({height:'hide', opacity:'hide'}, ddsmoothmenu.transition.outtime)
 
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if (smoothmenu.shadow.enable && !smoothmenu.css3support){
 
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if (ddsmoothmenu.detectwebkit){ //in WebKit browsers, set first child shadow's opacity to 0, as "overflow:hidden" doesn't work in them
 
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header.$shadow.children('div:eq(0)').css({opacity:0})
 
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}
 
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header.$shadow.css({overflow:'hidden'}).animate({height:0}, ddsmoothmenu.transition.outtime)
 
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}
 
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}, ddsmoothmenu.showhidedelay.hidedelay)
 
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}
 
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) //end hover
 
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}) //end $headers.each()
 
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if (smoothmenu.shadow.enable && smoothmenu.css3support){ //if shadows enabled and browser supports CSS3 shadows
 
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var $toplevelul=$('#'+setting.mainmenuid+' ul li ul')
 
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var css3shadow=parseInt(smoothmenu.shadow.offsetx)+"px "+parseInt(smoothmenu.shadow.offsety)+"px 5px #aaa" //construct CSS3 box-shadow value
 
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var shadowprop=["boxShadow", "MozBoxShadow", "WebkitBoxShadow", "MsBoxShadow"] //possible vendor specific CSS3 shadow properties
 
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for (var i=0; i<shadowprop.length; i++){
 
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$toplevelul.css(shadowprop[i], css3shadow)
 
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}
 
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}
 
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$mainmenu.find("ul").css({display:'none', visibility:'visible'})
 
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},
 
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init:function(setting){
 
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if (typeof setting.customtheme=="object" && setting.customtheme.length==2){ //override default menu colors (default/hover) with custom set?
 
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var mainmenuid='#'+setting.mainmenuid
 
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var mainselector=(setting.orientation=="v")? mainmenuid : mainmenuid+', '+mainmenuid
 
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document.write('<style type="text/css">\n'
 
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+mainselector+' ul li a {background:'+setting.customtheme[0]+';}\n'
 
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+mainmenuid+' ul li a:hover {background:'+setting.customtheme[1]+';}\n'
 
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+'</style>')
 
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}
 
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this.shadow.enable=(document.all && !window.XMLHttpRequest)? false : this.shadow.enable //in IE6, always disable shadow
 
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jQuery(document).ready(function($){ //ajax menu?
 
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if (typeof setting.contentsource=="object"){ //if external ajax menu
 
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ddsmoothmenu.getajaxmenu($, setting)
 
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}
 
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else{ //else if markup menu
 
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ddsmoothmenu.buildmenu($, setting)
 
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}
 
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})
 
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}
 
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} //end ddsmoothmenu variable
 
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</script>
 
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</body>
 
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</html>
 
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{{:Team:Wageningen_UR/Templates/Header}}
{{:Team:Wageningen_UR/Templates/Header}}
== Welcome to our Wiki! ==
== Welcome to our Wiki! ==
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{{:Team:Wageningen_UR/Templates/NavigationLeft}}
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{{:Team:Wageningen_UR/Templates/Style | text= {{:Team:Wageningen_UR/Templates/NavigationTop1}}
Major structural changes to be made in the coming days. :)
Major structural changes to be made in the coming days. :)
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{{:Team:Wageningen_UR/Templates/NavigationTop1}}
 
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==== Team Wageningen UR at iGEM ====
==== Team Wageningen UR at iGEM ====
The International Genetically Engineered Machine competition (iGEM) is a major competition in Synthetic Biology for undergraduate students. This year will be the eighth time this competition is held and the first time that a team
The International Genetically Engineered Machine competition (iGEM) is a major competition in Synthetic Biology for undergraduate students. This year will be the eighth time this competition is held and the first time that a team

Revision as of 07:28, 1 August 2011

Building a Synchronized Oscillatory System

Welcome to our Wiki!

{{:Team:Wageningen_UR/Templates/Style | text=

Major structural changes to be made in the coming days. :)

Team Wageningen UR at iGEM

The International Genetically Engineered Machine competition (iGEM) is a major competition in Synthetic Biology for undergraduate students. This year will be the eighth time this competition is held and the first time that a team from Wageningen University will participate. Our team aims to use a synthetic biology approach to engineer artificial cell-to-cell communication systems. We are working on two projects: "Synchronized Oscillatory System" and "Fungal Track 'n Trace". The aim of the Synchronized Oscillatory System project is to produce periodic oscillatory protein expression in E. coli cells, synchronized across a population, using the quorum sensing machinery from Vibrio fischerii. The Fungal Track 'n Trace project aims to implement an artificial intercellular communication system in the hyphal fungus Aspergillus nidulans.