Team:Tokyo Metropolitan/Project/Targeting

From 2011.igem.org

(Difference between revisions)
(Chemotaxis in E.coli)
(Chemotaxis in E.coli)
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 counter-clockwise:Frequently go straight.
 counter-clockwise:Frequently go straight.
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Rate of clockwise or counter-clockwise rotation is dependent on changes in concentration of chemoattractant.
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With increasing concentration of chemoattractant, flagellr motor tends to rotate in counter-clockwise.
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As a result, E.coli move for areas where chemoattractant concentrated.
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Targeting Device use this move in a different mechanisms.
Targeting Device use this move in a different mechanisms.

Revision as of 20:20, 3 October 2011

Targeting Device

Targeting Device gives new chemotaxis to E.coli. With this device, BeE.coli go for the target bacteria concentrated area. It is constructed to make chassis move in straight line when it receives a kind of chemicals. If the target bacteria produces a specific chemical substance, you can make chassis to swim for target bacteria by putting a appropriate promoter into this device.

Chemotaxis in E.coli

E.coli already have some chemotaxis. Move of E.coli with taxis is below.



Flagellar motor rotation in...

 clockwise:Frequently tumble.

 counter-clockwise:Frequently go straight.

Rate of clockwise or counter-clockwise rotation is dependent on changes in concentration of chemoattractant.

With increasing concentration of chemoattractant, flagellr motor tends to rotate in counter-clockwise.

As a result, E.coli move for areas where chemoattractant concentrated.


Targeting Device use this move in a different mechanisms.

Phosphorylated CheY is able to diffuse and bind to the flagellar motor, resulting in a change in motor rotation from counter-clockwise to clockwise. This causes a switch from smooth swimming to tumbling, allowing the bacteria to change direction. The motor has a baseline stochastic switching frequency in the absence of any stimulation, but binding of phosphorylated CheY increases this rate. CheY is dephosphorylated by CheZ, which terminates the signal.

By controlling cheZ gene expression, we can make new chemotaxis.

Construction

We use AHL producing bacteria as a model of of the target bacteria.