Team:SYSU-China/project Cesium Absorption

From 2011.igem.org

(Difference between revisions)
 
(7 intermediate revisions not shown)
Line 382: Line 382:
           <p>Accidentally, we found a transmembrane protein, TrkD, which is an ion channel with high affinity to cesium ion. </p>
           <p>Accidentally, we found a transmembrane protein, TrkD, which is an ion channel with high affinity to cesium ion. </p>
           <br />
           <br />
-
             <p>Protein TrkD (belongs to Kup system) is responsible for the low-affinity transport of potassium into the cell, but with high affinity to transport cesium. In contrast to Trk or Kdp, the Kup system does not strongly distinguish between the alkali cations K+, Rb+, or even Cs+. When both of Cs+ and K+ exist, the uptake of Cs+ has inhibition of that of K+. And among several proteins in Kup system, TrkD has the best effect of uptake of Cs+. Accordingly, after E.Coli approached Cs+, the expression of TrkD will help our E. coli to absorb Cs-137.</p>
+
             <p>Protein TrkD (belongs to Kup system) is responsible for the low-affinity transport of potassium into the cell, but with high affinity to transport cesium. In contrast to Trk or Kdp, the Kup system does not strongly distinguish between the alkali cations K+, Rb+, or even Cs+. When both of Cs+ and K+ exist, the uptake of Cs+ has inhibition of that of K+. And among several proteins in Kup system, TrkD has the best effect of uptake of Cs+. Accordingly, after <i>E. Coli</i> approached Cs+, the expression of TrkD will help our <i>E. Coli</i> to absorb Cs-137.</p>
            
            
Line 415: Line 415:
       <p>1. Expression Testing Modules</p>
       <p>1. Expression Testing Modules</p>
-
       <p>In order to test whether the elements we obtain from E.coli genome by PCR can express normally, we have constructed the expressional testing modules through genetic engineering methods: TrkD(no terminator)- gfp-pUC18 (Fig.1) and
+
       <p>In order to test whether the elements we obtain from <i>E. Coli</i> genome by PCR can express normally, we have constructed the expressional testing modules through genetic engineering methods:</p>
-
TrkD-pET32a (Fig.2)</p>
+
      <p>TrkD(no terminator)- gfp-pUC18 (Fig.1) and</p>
-
        <br />
+
      <p>TrkD-pET32a (Fig.2)</p>
 +
      <br />
       <p>Through the appearance of the green fluorescence with the first four modules, we can know the expression of TrkD. With the Western-blot tests using the modules TrkD-pET32a, we can directly know the expression state of TrkD.</p>
       <p>Through the appearance of the green fluorescence with the first four modules, we can know the expression of TrkD. With the Western-blot tests using the modules TrkD-pET32a, we can directly know the expression state of TrkD.</p>
Line 423: Line 424:
       <p>2. Functionalizing Testing Modules</p>
       <p>2. Functionalizing Testing Modules</p>
-
       <p>For the purpose of realizing the function that TrkD can start to express under the induction of nuclear radiation, we expected to ligate RecN with TrkD. But the ligation of RecN and TrkD was of great difficulty to be accomplished. This may be caused by the facts that RecN is too short and the overlapping zone of RecN and TrkD has far less than 15 base pairs, which is essential for recombinant PCR. However, TrkD expression under the promotion of RecA satisfies our requirements. As a result, we have constructed the following modules to conduct the functionalizing tests:
+
       <p>For the purpose of realizing the function that TrkD can start to express under the induction of nuclear radiation, we expected to ligate RecN with TrkD. As a result, we have constructed the following modules to conduct the functionalizing tests:</p>
-
RecA-TrkD-pET28a(promoter knock-out) (Fig.3)
+
      <p>RecN-TrkD-pET28a(promoter knock-out) (Fig.3)</p>
-
RecA- TrkD(no terminator)-gfp-pET28a(promoter knock-out) (Fig.4)</p>
+
      <p>RecN- TrkD(no terminator)-gfp-pET28a(promoter knock-out) (Fig.4)</p>
 +
      <p>With the first module, we could test the expression TrkD through the Cs+ absorption under the inducement of radiation. With the second module, the expression of TrkD under the radiation inducement can be reflected directly through the fluorescence of gfp.</p>
       <br />
       <br />
-
       <p>In addition to the modules constructed above, we also intend to construct the following module:
+
      <p>3. Final Functional Modules</p>
-
RecN-TrkD(no terminator)-ag43- pET28a(promoter knock-out)</p>
+
       <p>In addition to the modules constructed above, we also intend to construct the following module:</p>
 +
      <p>RecN-TrkD(no terminator)-ag43- pET28a(promoter knock-out)</p>
       <br />
       <br />
-
       <p>We construct a part consist of recNp, trkD and egfp. When E. Coli approaches radioactive elements, the intensity of radiation is much more than distant areas. After the intensity is higher than the threshold of recNp, the high expression of TrkD would be started. As a result, E. Coli would absorb cesium-137 around it.</p>
+
       <p>When <i>E. Coli</i> consisting of this module approaches radioactive elements, the intensity of radiation is much more than distant areas. After the intensity is higher than the threshold of <i>recNp</i>, the high expression of TrkD and <i>ag43</i> would be started. As a result, <i>E. Coli</i> would absorb cesium-137 around it and then integrate with each other.</p>
       </div>
       </div>
       <div class="page_content_text_Bar_enterTEXT_RpicBar">
       <div class="page_content_text_Bar_enterTEXT_RpicBar">
Line 458: Line 461:
     <br />
     <br />
     <div class="page_content_textBar_enterTEXT_enter">
     <div class="page_content_textBar_enterTEXT_enter">
-
       <P>We tested the expression of trkD by examing the fluorescence intensity. Using the laser scanning confocal microscope (LSCM), we can see obvious fluorescence trkD-GFP-pUC18(Fig.1 and Fig.2). The fluorescence of trkD-GFP-pUC18, is located mostly on the membrane of E.coli. The lac promoter, however, will express without induction of IPTG, resulting in the expression of GFP of control group, which is trkD-GFP-pUC18 that are not induced by IPTG. Consequently, we utilized the Flow Cytometer(FCM) to exam the intensity of GFP in control group and experiment group. (We are still working on that)</P>
+
       <P>We tested the expression of TrkD by examing the fluorescence intensity. Using the laser scanning confocal microscope (LSCM), we can see obvious fluorescence trkD-GFP-pUC18(Fig.1 and Fig.2). The fluorescence of trkD-GFP-pUC18, is located mostly on the membrane of <i>E. Coli</i>. The lac promoter, however, will express without induction of IPTG, resulting in the expression of GFP of control group, which is trkD-GFP-pUC18 that are not induced by IPTG. Consequently, we utilized the Flow Cytometer(FCM) to exam the intensity of GFP in control group and experiment group. (We are still working on that)</P>
       <br />
       <br />
       <p>We planned to exam the expression of gene trkD on protein level. We ran a western blot to find out the expression of trkD in protein level.</p>
       <p>We planned to exam the expression of gene trkD on protein level. We ran a western blot to find out the expression of trkD in protein level.</p>
       <br />
       <br />
-
       <p>Within the inducement of 0.1mg/mL Isopropyl β-D-1-thiogalactopyranoside(IPTG) at 18℃ for 18h, we extracted the total proteins of the E.coli transformed with TrkD-pET32a. Western Blot results showed that the quantity of protein TrkD significantly increased after the inducement, indicating that trkD expressed well. Additionally, sicne a basal expression caused by promoter lac in both plasmids, the control groups showed a small quantity of proteins(Fig.3).</p>
+
       <p>Within the inducement of 0.1mg/mL Isopropyl β-D-1-thiogalactopyranoside(IPTG) at 18℃ for 18h, we extracted the total proteins of the <i>E. Coli</i> transformed with TrkD-pET32a. Western Blot results showed that the quantity of protein TrkD significantly increased after the inducement, indicating that TrkD expressed well. Additionally, sicne a basal expression caused by promoter lac in both plasmids, the control groups showed a small quantity of proteins(Fig.3).</p>
       <br />
       <br />
-
       <p>We use TrkD-pET32a to test the function of trkD by measuring the amount of Cs+ in the experiment group, trkD-pET32a BL21 and control group, pET32a-BL21.</p>
+
       <p>We use TrkD-pET32a to test the function of TrkD by measuring the amount of Cs+ in the experiment group, trkD-pET32a BL21 and control group, pET32a-BL21.</p>
       <br />
       <br />
-
       <p>We added 3ml innocula of both the experiment group and control group into 100ml LB which contains 1g CsCl for 2h. Then we induced the expression by adding IPTG (0.5mM) and shook the conical flasks for about 4h. After that, we placed them in the 37℃ incubator for 4h. Then we centrifuged the bacteria and washed them by PBS for 3 times. Then we sent the sample to the analytical center to determine the concentration of Cs.</p>
+
       <p>We added 3ml bacteria liquid of both the experiment group and control group into 100ml LB which contains 1g CsCl for 2h. Then we induced the expression by adding IPTG (0.5mM) and shook the conical flasks for about 4h. After that, we placed them in the 37℃ incubator for 4h. Then we centrifuged the bacteria and washed them by PBS for 3 times. Then we sent the sample to the analytical center to determine the concentration of Cs.</p>
       <br />
       <br />
-
       <p>The analysis of Cs+ absorption through trkD indicates that the trkD constructed in plasmid can express normally, thus the experiment group has a higher amount of absorption than that of the control group. While the reason why the control has also absorbed Cs+ is that gene trkD also exists in E.coli's genome, so the control group can also express a certain amount of trkD to accomplish the absorption of Cs+. As a result, the absorption of the experiment group is 47.8% higher than that of the control group.</p>
+
       <p>The analysis of Cs+ absorption through TrkD indicates that the TrkD constructed in plasmid can express normally, thus the experiment group has a higher amount of absorption than that of the control group. While the reason why the control has also absorbed Cs+ is that gene <i>trkD</i> also exists in <i>E. Coli</i>'s genome, so the control group can also express a certain amount of TrkD to accomplish the absorption of Cs+. As a result, the absorption of the experiment group is 47.8% higher than that of the control group.</p>
       <br />
       <br />
-
       <p>In terms of the result, we have proved that the trkD constructed in the plasmid can function normally</p>
+
       <p>In terms of the result, we have proved that the <i>trkD</i> constructed in the plasmid can function normally</p>
</div>
</div>
     <div class="page_content_text_Bar_enterTEXT_RpicBar">
     <div class="page_content_text_Bar_enterTEXT_RpicBar">
         <div id="gallery" class="lbGallery">
         <div id="gallery" class="lbGallery">
             <ul>
             <ul>
-
               <li> <a href="https://static.igem.org/mediawiki/igem.org/f/f3/1.jpg" title="Fig.1  Fluorescence test of plasmid trkD-GFP-pUC18, control group."><img src="https://static.igem.org/mediawiki/2011/f/fa/CA_03_Fig_1_small.jpg" width="150" height="94" alt="Flower" /></a>  
+
               <li> <a href="https://static.igem.org/mediawiki/2011/1/13/CA_03_Fig_1.jpg" title="Fig.1  Fluorescence test of plasmid trkD-GFP-pUC18, control group."><img src="https://static.igem.org/mediawiki/2011/f/fa/CA_03_Fig_1_small.jpg" width="150" height="94" alt="Flower" /></a>  
                 Fig.1<p>&nbsp;&nbsp;Fluorescence test of plasmid trkD-GFP-pUC18, control group. No IPTG inducement</p>
                 Fig.1<p>&nbsp;&nbsp;Fluorescence test of plasmid trkD-GFP-pUC18, control group. No IPTG inducement</p>
               </li>
               </li>
Line 533: Line 536:
   <div class="page_content_relatedBar_project_wiki2">
   <div class="page_content_relatedBar_project_wiki2">
     <h2>Pages we think helpful:</h2>
     <h2>Pages we think helpful:</h2>
-
     <h1><a href="https://2011.igem.org/Team:SYSU-China/page_project_modules_construction">see how we construct our modules</a></h1>
+
     <h1><a href="http://jb.asm.org/cgi/reprint/171/4/2219?view=long&pmid=2649491">Kup system for taking cesium ion
-
     <h1><a href="https://2011.igem.org/Team:SYSU-China/page_project_modules_verification">see how we verify each module</a></h1>
+
</a></h1>
-
     <h1><a href="https://2011.igem.org/Team:SYSU-China/main_page_story">or see our whole idea in Story page</a></h1>
+
    <h1><a href="http://www.ploughshares.org/blog/topic/fukushima?gclid=CPTm3oeki6wCFY1S4godSwN8mA">Nuclear Concern</a></h1>
 +
     <h1><a href="http://www.japan.org/fallout">Japan Earthquake and Nuclear Disaster News and Information
 +
</a></h1>
 +
    <h1><a href="http://japannuclearleak.com/">Japan Earthquake and Nuclear</a></h1>
 +
     <h1><a href="http://www.fukushimameltdown.org/">Fukushima Donation
 +
</a></h1>
 +
    <h1><a href="http://www.iaea.org/">Ocean Nuclear Safety</a></h1>
     <p>&nbsp;</p>
     <p>&nbsp;</p>
   </div>
   </div>

Latest revision as of 04:02, 29 October 2011


<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> Modules Verification-Sun Yat-sen Univ.

Background


Accidentally, we found a transmembrane protein, TrkD, which is an ion channel with high affinity to cesium ion.


Protein TrkD (belongs to Kup system) is responsible for the low-affinity transport of potassium into the cell, but with high affinity to transport cesium. In contrast to Trk or Kdp, the Kup system does not strongly distinguish between the alkali cations K+, Rb+, or even Cs+. When both of Cs+ and K+ exist, the uptake of Cs+ has inhibition of that of K+. And among several proteins in Kup system, TrkD has the best effect of uptake of Cs+. Accordingly, after E. Coli approached Cs+, the expression of TrkD will help our E. Coli to absorb Cs-137.

Modules


We have designed three categories of modules - Expressional Testing Modules, Functionalizing Testing Modules and Final Functional Modules - to test the expression and function of every element and to accomplish the final function. The followings are the details of these modules.


1. Expression Testing Modules

In order to test whether the elements we obtain from E. Coli genome by PCR can express normally, we have constructed the expressional testing modules through genetic engineering methods:

TrkD(no terminator)- gfp-pUC18 (Fig.1) and

TrkD-pET32a (Fig.2)


Through the appearance of the green fluorescence with the first four modules, we can know the expression of TrkD. With the Western-blot tests using the modules TrkD-pET32a, we can directly know the expression state of TrkD.


2. Functionalizing Testing Modules

For the purpose of realizing the function that TrkD can start to express under the induction of nuclear radiation, we expected to ligate RecN with TrkD. As a result, we have constructed the following modules to conduct the functionalizing tests:

RecN-TrkD-pET28a(promoter knock-out) (Fig.3)

RecN- TrkD(no terminator)-gfp-pET28a(promoter knock-out) (Fig.4)

With the first module, we could test the expression TrkD through the Cs+ absorption under the inducement of radiation. With the second module, the expression of TrkD under the radiation inducement can be reflected directly through the fluorescence of gfp.


3. Final Functional Modules

In addition to the modules constructed above, we also intend to construct the following module:

RecN-TrkD(no terminator)-ag43- pET28a(promoter knock-out)


When E. Coli consisting of this module approaches radioactive elements, the intensity of radiation is much more than distant areas. After the intensity is higher than the threshold of recNp, the high expression of TrkD and ag43 would be started. As a result, E. Coli would absorb cesium-137 around it and then integrate with each other.

Function


We tested the expression of TrkD by examing the fluorescence intensity. Using the laser scanning confocal microscope (LSCM), we can see obvious fluorescence trkD-GFP-pUC18(Fig.1 and Fig.2). The fluorescence of trkD-GFP-pUC18, is located mostly on the membrane of E. Coli. The lac promoter, however, will express without induction of IPTG, resulting in the expression of GFP of control group, which is trkD-GFP-pUC18 that are not induced by IPTG. Consequently, we utilized the Flow Cytometer(FCM) to exam the intensity of GFP in control group and experiment group. (We are still working on that)


We planned to exam the expression of gene trkD on protein level. We ran a western blot to find out the expression of trkD in protein level.


Within the inducement of 0.1mg/mL Isopropyl β-D-1-thiogalactopyranoside(IPTG) at 18℃ for 18h, we extracted the total proteins of the E. Coli transformed with TrkD-pET32a. Western Blot results showed that the quantity of protein TrkD significantly increased after the inducement, indicating that TrkD expressed well. Additionally, sicne a basal expression caused by promoter lac in both plasmids, the control groups showed a small quantity of proteins(Fig.3).


We use TrkD-pET32a to test the function of TrkD by measuring the amount of Cs+ in the experiment group, trkD-pET32a BL21 and control group, pET32a-BL21.


We added 3ml bacteria liquid of both the experiment group and control group into 100ml LB which contains 1g CsCl for 2h. Then we induced the expression by adding IPTG (0.5mM) and shook the conical flasks for about 4h. After that, we placed them in the 37℃ incubator for 4h. Then we centrifuged the bacteria and washed them by PBS for 3 times. Then we sent the sample to the analytical center to determine the concentration of Cs.


The analysis of Cs+ absorption through TrkD indicates that the TrkD constructed in plasmid can express normally, thus the experiment group has a higher amount of absorption than that of the control group. While the reason why the control has also absorbed Cs+ is that gene trkD also exists in E. Coli's genome, so the control group can also express a certain amount of TrkD to accomplish the absorption of Cs+. As a result, the absorption of the experiment group is 47.8% higher than that of the control group.


In terms of the result, we have proved that the trkD constructed in the plasmid can function normally

2011 iGEM Mainpage

2011 iGEM Team wikis

From the 2011 iGEM team SYSU-China (2011)

Sun Yat-Sen University, Guangzhou, China

Address: 135# Xingang Rd.(W.), Haizhu Guangzhou, P.R.China

visit the Sun Yat-sen university website

Thanks Apycom jQuery Menus and visit their website