Team:Paris Bettencourt/HumanPractice/collaborationMap

From 2011.igem.org

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<h1>Collaboration Map</h1>
<h1>Collaboration Map</h1>
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<p>Nanotubes is a new way of communication between bacteria but it also highlights the importance of collaboration between bacteria in order to survive (for example, see antibiotics experiment).
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<p>Nanotubes are a new way of communication between bacteria but it also highlights the importance of collaboration between bacteria in order to survive (antibiotic cross resistance for example). Our question is: do the iGEM teams make (nano)tubes between each other in order to succeed in this competition? Indeed, building collaborative projects, sharing biobricks, strains or protocols could give a selective advantage to the teams that collaborate. Nanotubes can create random relationships that can be of a long or short duration... Just the way it happens with people! Indeed, teams can exchange imformation and knowledge by collaborating, sometimes at an international level. Collaboration between teams can be a long-term relationship (like the one between Paris Bettencourt and PKU), or shorter flings as we will see.</p>
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Our question is: do the iGEM teams make (nano)tubes between each other in order to succeed in this competition?
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Indeed, building collaborative projects, sharing biobricks, strains or protocols could give a selective advantage to the teams that collaborate. Nanotubes can create random relationships between cells, possibly from different types/species. Those relationships could have a long or a short duration... Just the way it happens with people! And more specifically between teams. Indeed, teams can exchange imformation and knowledge by collaborating, sometimes at an international level. Collaboration between teams can be a long-term relationship (like the one between Paris Bettencourt and PKU), or shorter flings.</p>
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<h2> Objectives </h2>
<h2> Objectives </h2>
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<p>Extract from wikis (collaborations, medals, prizes, geographic location)</p>
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<ol>
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<p>Represent the collaboration between teams as a network </p>
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<li>Extract data from wikis (collaborations, medals, prizes, geographic location)</p>
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<p> Relate success in the competition to collaborations and other parameters</p>
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<li>Represent the collaboration between teams as a network </p>
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<li>Relate success in the competition to collaborations and other parameters</p>
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<h2> Methodology </h2>
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</ol>
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<p>With all the data obtained by scanning all the wikis from 2007 to 2011, we <em>created a collaboration graph</em> with <a href="http://www.touchgraph.com/navigator">Touchgraph</a> (you can find a tutorial and our files to download below).</p>
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<p>This customizable tool allows us to have very good vizualisations of the collaborating network of iGEM and its evolution through time. The main asset is that all the parameters can be freely chosen and we invite you to give it a try, you can really find out surprising facts about iGEM that way.</p>
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<p>We developped a graphic navigator for static representation of those graphs in flash which can be tested below.</p>
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<h2>Collaboration map per year using <a href="http://www.touchgraph.com/navigator">Touchgraph</a></h2>
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<p>The navigators bellow allow to zoom in and out. It also proposes to choose between different graphe (one per year for example).</p>
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<p>This map represent the collaboration between teams between 2009 and 2011. All these data were directly obtained from the wikis. It shows us that the most collaborative teams are the newly formed ones.</p>
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<H2>Collaboration map per year</h2>
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<p>This map represent the collaboration between teams for each year from 2007.
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There is no data about prizes and medal on IGEM site for 2008.</p>
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<p>this map show us that teams witch are the most collaborating are ?majoritarely? new teams</p>
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<center>
<center>
<div id="flashContent">
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<center><img src="https://static.igem.org/mediawiki/2011/4/4f/LegendCOLABPARIS2011.png"></center>
<center><img src="https://static.igem.org/mediawiki/2011/4/4f/LegendCOLABPARIS2011.png"></center>
<h2>Level of collaboration</h2>
<h2>Level of collaboration</h2>
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this map propose Three differents graphs :
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The following graphs offer us three different options:
<ul>
<ul>
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<li> The first, show teams collapsed by level of collaboration for each region :
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<li> The first one shows teams collapsed by level of collaboration for each region:
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the first lvl is no colaboration, the second is collaboration only with teams of the same region, and the third is collaboration between regions. </li>
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the first level is no collaboration, the second is collaboration only with teams of the same region, and the third is collaboration between regions. </li>
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<li> The second graph show us the repartition of collaborating teams by country : each teams of the same country have the same color</li>
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<li> The second graph shows the distribution of collaborating teams by country: each teams of the same country have the same color</li>
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<li> The third one show the ratio of collaboration per region : all the teams of each region have the same color</li>
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<li> The third one shows the ratio of collaboration per region: all the teams of each region have the same color</li>
</ul>
</ul>
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<p>For example on this map we can see that countries with a lot of teams have just a little parts of them witch are collaborating (look at, China and US)</p>
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<p>For example on this map we can see that countries with a lot of teams have just a little parts of them which are collaborating (look at, China and US)</p>
<center>
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<h2>Japan collaboration over time</h2>
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<h2>An example: Japan vs USA collaborations over time</h2>
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<p>we took the example fo the Japan collaboration over the years because all the teams usually collaborate mostly with other Japan team.</p>
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<p> We were appalled by the difference between Japanese and US levels of connectivity. Indeed, we observed that throughout the years Japanese teams have constantly collaborated between each other. As a polar opposite, very few US teams connected to each other. Japan and China has the "meet ups" where all the teams in the country meet to share ideas and present their project to other teams. This is contributing to the greater of links between teams in this region which creates a hub (highly linked) in the entire iGEM community. </p>
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<center>
<center>
<div id="flashContent">
<div id="flashContent">
<object classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="880" height="900" id="japan" align="middle">
<object classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="880" height="900" id="japan" align="middle">
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<param name="movie" value="https://static.igem.org/mediawiki/2011/7/7a/Japan.swf" />
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<param name="movie" value="http://dl.dropbox.com/u/22336379/japan.swf" />
<param name="quality" value="high" />
<param name="quality" value="high" />
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<param name="allowScriptAccess" value="sameDomain" />
<param name="allowScriptAccess" value="sameDomain" />
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<object type="application/x-shockwave-flash" data="https://static.igem.org/mediawiki/2011/7/7a/Japan.swf" width="880" height="900">
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<object type="application/x-shockwave-flash" data="http://dl.dropbox.com/u/22336379/japan.swf" width="880" height="900">
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<param name="movie" value="https://static.igem.org/mediawiki/2011/7/7a/Japan.swf" />
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<param name="movie" value="http://dl.dropbox.com/u/22336379/japan.swf" />
<param name="quality" value="high" />
<param name="quality" value="high" />
<param name="bgcolor" value="#ffffff" />
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<h2>Preliminary conclusions</h2>
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<p> As years pass, there are two trends: the first is the increase in the number of teams, the second is that they get more and more inter-connected. Unsurprisingly, we can assess qualtitatively that the most successful teams are the connected ones. Indeeed, the one that cumulate gold medals, prizes etc. are the ones that also made an effort in the way of collaborating. But we cannot formally recognize that connecting to other teams is a key to sucess, for instance the MIT in 2010 won "Best Manufacturing Project" award but were not collaborating. All we can say, based on our experience, is that the more you exchange, the further your ideas and projects can advance.
<h2>TouchGraph simple manual for collaboration graphes</h2>
<h2>TouchGraph simple manual for collaboration graphes</h2>
<p>You can found here the database used : <a href="https://static.igem.org/mediawiki/2011/4/47/Data_final.zip">Data file and project file</a></p>
<p>You can found here the database used : <a href="https://static.igem.org/mediawiki/2011/4/47/Data_final.zip">Data file and project file</a></p>
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<p>all the graphes used on this page are extracted from TouchGraph representation</p>
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<p>All the graphs used on this page are extracted from TouchGraph representation</p>
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<p>to use those data, download TouchGraph and instal it.</p>
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<p>To use these data, you can download TouchGraph and install it.</p>
<p>Next, load the project file and the Data file.</p>
<p>Next, load the project file and the Data file.</p>
<p>In the TouchGraph menu, choose settings-> filter to change the year, or for adding more filter.</p>
<p>In the TouchGraph menu, choose settings-> filter to change the year, or for adding more filter.</p>

Latest revision as of 03:36, 29 October 2011

Team IGEM Paris 2011

Collaboration Map

Nanotubes are a new way of communication between bacteria but it also highlights the importance of collaboration between bacteria in order to survive (antibiotic cross resistance for example). Our question is: do the iGEM teams make (nano)tubes between each other in order to succeed in this competition? Indeed, building collaborative projects, sharing biobricks, strains or protocols could give a selective advantage to the teams that collaborate. Nanotubes can create random relationships that can be of a long or short duration... Just the way it happens with people! Indeed, teams can exchange imformation and knowledge by collaborating, sometimes at an international level. Collaboration between teams can be a long-term relationship (like the one between Paris Bettencourt and PKU), or shorter flings as we will see.

Objectives

  1. Extract data from wikis (collaborations, medals, prizes, geographic location)

  2. Represent the collaboration between teams as a network

  3. Relate success in the competition to collaborations and other parameters

This customizable tool allows us to have very good vizualisations of the collaborating network of iGEM and its evolution through time. The main asset is that all the parameters can be freely chosen and we invite you to give it a try, you can really find out surprising facts about iGEM that way.

Collaboration map per year using Touchgraph

This map represent the collaboration between teams between 2009 and 2011. All these data were directly obtained from the wikis. It shows us that the most collaborative teams are the newly formed ones.

Legend

Level of collaboration

The following graphs offer us three different options:
  • The first one shows teams collapsed by level of collaboration for each region: the first level is no collaboration, the second is collaboration only with teams of the same region, and the third is collaboration between regions.
  • The second graph shows the distribution of collaborating teams by country: each teams of the same country have the same color
  • The third one shows the ratio of collaboration per region: all the teams of each region have the same color

For example on this map we can see that countries with a lot of teams have just a little parts of them which are collaborating (look at, China and US)

An example: Japan vs USA collaborations over time

We were appalled by the difference between Japanese and US levels of connectivity. Indeed, we observed that throughout the years Japanese teams have constantly collaborated between each other. As a polar opposite, very few US teams connected to each other. Japan and China has the "meet ups" where all the teams in the country meet to share ideas and present their project to other teams. This is contributing to the greater of links between teams in this region which creates a hub (highly linked) in the entire iGEM community.

Preliminary conclusions

As years pass, there are two trends: the first is the increase in the number of teams, the second is that they get more and more inter-connected. Unsurprisingly, we can assess qualtitatively that the most successful teams are the connected ones. Indeeed, the one that cumulate gold medals, prizes etc. are the ones that also made an effort in the way of collaborating. But we cannot formally recognize that connecting to other teams is a key to sucess, for instance the MIT in 2010 won "Best Manufacturing Project" award but were not collaborating. All we can say, based on our experience, is that the more you exchange, the further your ideas and projects can advance.

TouchGraph simple manual for collaboration graphes

You can found here the database used : Data file and project file

All the graphs used on this page are extracted from TouchGraph representation

To use these data, you can download TouchGraph and install it.

Next, load the project file and the Data file.

In the TouchGraph menu, choose settings-> filter to change the year, or for adding more filter.

All the parameters of the graph can be edited with the Settings-> show Dialog menu

More information about TouchGraph can be find there : TouchGraph Manual