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Team:Imperial College London/Project Auxin Specifications
From 2011.igem.org
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<p><b>2. Designing fragment sequences amenable to polymerase extension assembly methods at a minimal cost.</b></p> | <p><b>2. Designing fragment sequences amenable to polymerase extension assembly methods at a minimal cost.</b></p> | ||
<ul class="a"> | <ul class="a"> | ||
| - | <li><p>We decided to use polymerase extension assembly rather than standard restriction-ligation based assembly because...</li></pi> | + | <li><p>We decided to use polymerase extension assembly rather than standard restriction-ligation based assembly because it would allow us to order the sequences in fragments. This would keep the orders below 1000bp and also decrease the production time. Also, methods like Gibson and CPEC allow us to build constructs containing several components in one reaction rather than having to ligate each BioBrick separately.</li></pi> |
</ul> | </ul> | ||
<p><b>3. Achieving adequate auxin expression levels in our chassis to enhance root growth in our plant model.</b> </p> | <p><b>3. Achieving adequate auxin expression levels in our chassis to enhance root growth in our plant model.</b> </p> | ||
Revision as of 22:15, 19 September 2011
Module 2: Auxin Xpress
Auxin, or Indole 3-acetic acid (IAA), is a plant growth hormone which is produced by several soil bacteria. We have taken the genes encoding the IAA-producing pathway from Pseudomonas savastanoi and expressed them in Escherichia coli. Following chemotaxis towards the roots and uptake by the Phyto Route module, IAA expression will promote root growth with the aim of improving soil stability.
Specifications
1. A simple auxin producing pathway that can be expressed in our chassis.
Although auxin is a plant hormone, many plant growth promoting (PGP) bacteria express auxin to provide to symbiotic plants in exchange for nutrients. There are several different pathways that can produce auxin (Figure 1).
2. Designing fragment sequences amenable to polymerase extension assembly methods at a minimal cost.
We decided to use polymerase extension assembly rather than standard restriction-ligation based assembly because it would allow us to order the sequences in fragments. This would keep the orders below 1000bp and also decrease the production time. Also, methods like Gibson and CPEC allow us to build constructs containing several components in one reaction rather than having to ligate each BioBrick separately.
3. Achieving adequate auxin expression levels in our chassis to enhance root growth in our plant model.
The aim of expressing auxin in our chassis is to enhance plant root growth and ultimately improve soil stability. Therefore we need to model auxin concentration on root growth to determine the optimum concentration for the roots without inducing toxicity.
4. Tweaking auxin production levels by promoter switching without affecting RBS strength.
To promote open-source use of the BioBricks we will submit, we are designing the part sequences to be easily interchangeable. This will also allow insertion of different promoters to tweak expression levels of auxin.
5. Building a construct that is codon optimised for E. coli and B. subtilis.
We are using E. coli as our chassis for proof of concept because it has been proven that it is taken up actively by Arabidopsis [2]. However in the future, we want to have the potential to build the same construct in B. subtilis, a spore-forming bacteria prominent in soil.
Fig 1. Auxin producing pathways [1]
References
[1]Spaepen S. et al., 2007. Indole-3-acetic acid in microbial and microorganism-plant signaling. Federation of European Microbiological Societies Microbiology Reviews , 31, pp.425–448.
[2]Paungfoo-Lonhienne C. et al., 2010. Turning the Table: Plants Consume Microbes as a Source of Nutrients. Plos ONE, 5(7).
