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Team:EPF-Lausanne/Protocols
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* [[Team:EPF-Lausanne/Protocols/Gel_Electrophoresis|Agarose gel electrophoresis]]: DNA samples analysis (can be followed by band purification). | * [[Team:EPF-Lausanne/Protocols/Gel_Electrophoresis|Agarose gel electrophoresis]]: DNA samples analysis (can be followed by band purification). | ||
* [[Team:EPF-Lausanne/Protocols/Colony PCR|Colony PCR]]: Analyze the plated transformed cells, to see if Gibson assembly worked | * [[Team:EPF-Lausanne/Protocols/Colony PCR|Colony PCR]]: Analyze the plated transformed cells, to see if Gibson assembly worked | ||
| - | * [[Team:EPF-Lausanne/Protocols/T7-ext|T7 extension PCR]]: Put T7 promoter upstream | + | * [[Team:EPF-Lausanne/Protocols/T7-ext|T7 extension PCR]]: Put T7 promoter upstream of a gene |
| + | * [[Team:EPF-Lausanne/Protocols/bluntends|Blunt-End Cloning]]: Making Blunt Ends | ||
=== DNA recovery === | === DNA recovery === | ||
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* [[Team:EPF-Lausanne/Protocols/Master microfabrication for PDMS replica molding |Master microfabrication for PDMS replica molding]] | * [[Team:EPF-Lausanne/Protocols/Master microfabrication for PDMS replica molding |Master microfabrication for PDMS replica molding]] | ||
* [[Team:EPF-Lausanne/Protocols/MITOMI_protein_DNA|MITOMI: Protein – DNA interactions]] | * [[Team:EPF-Lausanne/Protocols/MITOMI_protein_DNA|MITOMI: Protein – DNA interactions]] | ||
| - | |||
* [[Team:EPF-Lausanne/Protocols/Klenow dsDNA synthesis|Klenow dsDNA synthesis]] | * [[Team:EPF-Lausanne/Protocols/Klenow dsDNA synthesis|Klenow dsDNA synthesis]] | ||
Latest revision as of 15:35, 16 October 2011
Protocols
Contents |
Molecular Biology
Products and stock preparation
- Primer preparation: initial dilution of ordered primers.
- Competent Cells: prepare cells for plasmid uptake.
- Competent Cells. Protocol II (Inoue method).
- Glycerol stock: stock transformed cells at -80°C.
- Agar plate preparation: preparing agar plates for cell cultures.
- Autoclave: to sterilize solutions and glassware.
Cloning, assembly, and mutations
- Transformation: introduce foreign plasmid into competent cells.
- Plating: plate transformed cells
- Liquid cultures: when cells have grown on plates, put them in liquid cultures
- Gibson assembly.
- Linear template- TetR.
- tetR Overlap Extension PCR: induce specific mutations on tetR linear template.
- tetR Site-specific mutagenesis: induce site-specific mutations on a plasmid containing tetR.
- Agarose gel electrophoresis: DNA samples analysis (can be followed by band purification).
- Colony PCR: Analyze the plated transformed cells, to see if Gibson assembly worked
- T7 extension PCR: Put T7 promoter upstream of a gene
- Blunt-End Cloning: Making Blunt Ends
DNA recovery
- Plasmid preparation - Miniprep: recover plasmids from a bacterial culture.
- Gel purification: recover DNA separated by electrophoresis
Biochemistry
- IPTG test: test expression of a gene downstream from Plac
Microfluidics
- PDMS two layer device fabrication
- Master microfabrication for PDMS replica molding
- MITOMI: Protein – DNA interactions
- Klenow dsDNA synthesis
Worm culture
- Agar plate preparation: preparing MG Agar plates for worm cultures.
