Team:Caltech/Week 7

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(Difference between revisions)
(Created page with "{{Team:Caltech/templateheader| Content= __NOTOC__ ==July 24== Started overnight cultures of pSB3K3<br/> ==July 25== PCR'd parts for pNT002: R0040, K123001, B0014, pSB4A5<br/> PCR...")
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PCR'd GFP control insert and pNT003 insert<br/>
PCR'd GFP control insert and pNT003 insert<br/>
Gibson assembly and transformation of pNT003 with a negative control<br/>
Gibson assembly and transformation of pNT003 with a negative control<br/>
 +
Nanodrop of evaporation concentrated PFGE DNA: 9-1: 11.4ng/uL; 10-2: 29.7ng/uL<br/>
 +
Attempt at packaging above DNA with fosmid kit extract, but enzyme wasn't heat inactivated as par procedure<br/>
 +
50 mL of phage dillution buffer made for fosmid kit<br/>
 +
Evaporation concentrated more PFGE DNA. Nandrop results: 9mix: 14.3ng/uL; 10mix: 2.2ng/uL<br/>
 +
Overnight ligation of 9mix and (10mix + 10-2) to redo fosmid packaging, at 16&#176;C<br/>
===Results===
===Results===
Decided not to use the pNT003 PCR'd insert, as the band of the correct length was much fainter than a lower length band. Chose not to do Gibson assembly of the positive GFP control, despite not having any green colonies last week, instead focusing on assembling pNT002 and pNT003.<br/>
Decided not to use the pNT003 PCR'd insert, as the band of the correct length was much fainter than a lower length band. Chose not to do Gibson assembly of the positive GFP control, despite not having any green colonies last week, instead focusing on assembling pNT002 and pNT003.<br/>
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</table>
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===July 26===
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Packaging of 9mix and (10mix + 10-2) ligations
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Revision as of 22:29, 26 July 2011


Caltech iGEM 2011



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July 24

Started overnight cultures of pSB3K3

July 25

PCR'd parts for pNT002: R0040, K123001, B0014, pSB4A5
PCR'd GFP control insert and pNT003 insert
Gibson assembly and transformation of pNT003 with a negative control
Nanodrop of evaporation concentrated PFGE DNA: 9-1: 11.4ng/uL; 10-2: 29.7ng/uL
Attempt at packaging above DNA with fosmid kit extract, but enzyme wasn't heat inactivated as par procedure
50 mL of phage dillution buffer made for fosmid kit
Evaporation concentrated more PFGE DNA. Nandrop results: 9mix: 14.3ng/uL; 10mix: 2.2ng/uL
Overnight ligation of 9mix and (10mix + 10-2) to redo fosmid packaging, at 16°C

Results

Decided not to use the pNT003 PCR'd insert, as the band of the correct length was much fainter than a lower length band. Chose not to do Gibson assembly of the positive GFP control, despite not having any green colonies last week, instead focusing on assembling pNT002 and pNT003.

lane 1 NEB 2-log ladder, 2-4 pSB4A5, 5-7 R0040, 8-10 K123001, 11-13 B0014
lane 1 NEB 2-log ladder, 2-4 pNT003 insert, 5 R0010, 6 K123003, 7 B0014, 8 blank, 9-11 GFP insert, 12 GFP constitutive promoter, 13 GFP, 14 GFP terminator, 15 NEB 2-log ladder

PCR concentrations

Part Concentration (ng/ul)
R0040 for pNT002 56.4
K123001 121.5
B0014 for pNT002 100.8
pSB4A5-1 98.0
pSB4A5-2 97.4

July 26

Packaging of 9mix and (10mix + 10-2) ligations


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