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From 2011.igem.org

Because of the device-like nature of out project modeling plays a big part. This page gives an overview of some of our organistional considerations and provides links to the more practical aspects.

Methods

First of all we have to decide in what enviorment we want to model in. There is a lot of different software out there. Our 2009 team did a large survey on modeling packages used in Igem [1]. Our whitebook also included several biomodeling packages that we should look at:

• SynBioSS
• SimBiology
• CellDesigner
• COPASI
• Matlab

Modules

We decided to build our model in the samen modules as the cloners will use. Because of the fragilety of the by stable switches these should be modeled first.

• Module 1

Parameters

Halflife of the lasI-Lite : 4 minutes Halflife of the lasI : <60 minutes