Team:Washington/Team/Members

From 2011.igem.org

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== '''Who we are''' ==
== '''Who we are''' ==
<gallery caption="Undergraduate Team Members" widths="180px" heights="120px" perrow="3">
<gallery caption="Undergraduate Team Members" widths="180px" heights="120px" perrow="3">
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Image:Washington_jeff_johnson.png|<center>Jeff Johnson</center>
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Image:Washington_.jpg|<center></center>
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Image:chris_eiben.jpg|<center>Chris Eiben</center>
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Image:Washington_.jpg|<center></center>
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Image:Washington_Huber_Tomas.jpg|<center>Tomas Huber</center>
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Image:Washington_.jpg|<center></center>
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Image:Washington_Ivan_Huang.jpg|<center>Ivan Huang</center>
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Image:Washington_.jpg|<center></center>
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Image:Washington_Peixian.JPG‎|<center>Peixian Liu</center>
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Image:Washington_.jpg‎|<center></center>
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Image:Washington_Denny_Luan.JPG|<center>Denny Luan</center>
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Image:Washington_.jpg|<center></center>
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Image:Wu_Cindy.jpg|<center>Cindy Wu</center>
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Image:Washington_.jpg|<center></center>
Image:Washington_Sean_Wu.jpg|<center>Sean Wu</center>
Image:Washington_Sean_Wu.jpg|<center>Sean Wu</center>
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Image:Washington_david_zong.jpg‎|<center>David Zong</center>
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Image:Washington_David_Zong.jpg‎|<center>David Zong</center>
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Image:Laura_Austin.jpg|<center>Laura Austin</center>
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Image:Washington_.jpg|<center></center>
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Image:me2.jpg|<center>Matt Coyne</center>
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Image:Washington_.jpg|<center></center>
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Image:Washington_Justin.jpg|<center>Justin De Leon</center>
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Image:Washington_.jpg|<center>Justin De Leon</center>
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Image:Matthew_Harger.JPG|<center>Matthew Harger</center>
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Image:Washington_.jpg|<center>Matthew Harger</center>
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Image:DSC06208.JPG|<center>Jesa Landis</center>
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Image:Washington_.jpg|<center></center>
</gallery>
</gallery>
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<gallery caption="Graduate Advisors" widths="180px" heights="120px" perrow="3">
<gallery caption="Graduate Advisors" widths="180px" heights="120px" perrow="3">
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Image:Washington_matt_smith.png|<center>Matt Smith <br/> Molecular and Cellular Biology</center>
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Image:Washington_.jpg|<center>Matt Smith <br/> Molecular and Cellular Biology</center>
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Image:Ingrid.jpg|<center>Ingrid Swanson <br/> Microbiology <br/></center>
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Image:Washington_.jpg|<center>Ingrid Swanson <br/> Microbiology <br/></center>
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Image:Regbert.jpg|<center>Rob Egbert <br/> Electrical Engineering</center>
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Image:Washington_.jpg|<center>Rob Egbert <br/> Electrical Engineering</center>
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Image:galdzicki.jpg|<center>Michal Galdzicki <br/> Biomedical and Health Informatics</center>
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Image:Washington_.jpg|<center>Justin Siegel <br/> Biomolecular Structure and Design</center>
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Image:Washington_Siegel_2010.jpg|<center>Justin Siegel <br/> Biomolecular Structure and Design</center>
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Image:Washington_.jpg|<center>Jeremy Mills <br/><br/></center>
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Image:Washington_.jpg|<center>Chris Eiben <br/><br/></center>
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Image:Washington_.jpg|<center>Aaron Chevalier <br/><br/></center>
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</gallery>
</gallery>
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image:Washington_David_Baker.jpg|<center>David Baker <br/> Biochemistry</center>
image:Washington_David_Baker.jpg|<center>David Baker <br/> Biochemistry</center>
Image:Washington_Klavins.jpg|<center>Eric Klavins <br/> Electrical Engineering</center>
Image:Washington_Klavins.jpg|<center>Eric Klavins <br/> Electrical Engineering</center>
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image:Washington_Mougous.jpg|<center>Joseph Mougous <br/> Microbiology</center>
 
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Image:Washington_Sauro.jpg|<center>Herbert Sauro <br/> Bioengineering</center>
 
</gallery>
</gallery>
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<gallery caption="Collaborators and Support" widths="180px" heights="120px" perrow="3">
<gallery caption="Collaborators and Support" widths="180px" heights="120px" perrow="3">
Image:Washington_Biochemistry.gif|<center>Biochemistry <br/> Lab space</center>
Image:Washington_Biochemistry.gif|<center>Biochemistry <br/> Lab space</center>
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image:Washington_uwmb_header.jpg|<center>Microbiology <br/> Financial support and lab space</center>
 
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Image:Wahsington_Fisher_Logo.jpg|<center>Fisher <br/> Lab Materials</center>
 
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Image:Washington_Arthur_Friedlander.jpg|<center>Arthur Friedlander @ USAMRIID <br/> Help planning the project and offering to test our new enzymes' effectiveness against Anthrax!</center>
 
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Image:Washington_Chandran.png|<center>Deepak Chandran @ Bioengineering, University of Washington<br/> Always available to answer our TinkerCell API questions no matter how trivial.</center>
 
</gallery>
</gallery>
== '''Who did what''' ==
== '''Who did what''' ==
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The teams were assembled during our winter quarter.  During this term we went around to classes and had weekly meeting to introduce students to synthetic biology through a series of guest lectures.  During the spring students participated in brainstorming projects related to the sponsoring Faculty advisors labs (Baker, Mougous, Klavins, Sauro) and came up with the project they wanted to carry out.  Over the summer, students completed all of the experimental work, but worked closely with both graduate students and faculty advisors to plan the most pertinent experiments and make the most of our limited time.
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The teams were assembled during our winter quarter.  During this term we went around to classes and had weekly meeting to introduce students to synthetic biology through a series of guest lectures.  During the spring students participated in brainstorming projects related to the sponsoring Faculty advisors labs (Baker and Klavins) and came up with the project they wanted to carry out.  Over the summer, students completed all of the experimental work, but worked closely with both graduate students and faculty advisors to plan the most pertinent experiments and make the most of our limited time.
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=== The Gram Positive Therapeutic ===
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Chris Eiben, Sean Wu, Peixian Liu, David Zong, Ivan Huang, Cindy Wu, Denny Luan designed, expressed, purified, and characterized CapD, CapD_CP, and the 87 CapD_CP variants.
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=== The Gram Negative Therapeutic ===
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Matthew Harger, Matthew Coyne, and Jesa Landis cloned and characterized the Tse2/Tsi2 locus into BioBrick parts.
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Laura Austin and Justin De Leon recombineered and characterized the T7 promoter into the T6SS fosmid.
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=== Alkanes Production ===
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=== New Tools ===
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=== Gibson Vectors ===
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Jeff Johnson developed the WikiDust and PartsRobot software. Jeff also wrote [http://openwetware.org/wiki/The_BioBricks_Foundation:RFC#BBF_RFC_68:_Standard_for_the_Electronic_Distribution_of_SBOLv_Diagrams BBF RFC 68]. Michal Galdzicki and Professor Herbert M. Sauro read and revised the document.
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Tomas Huber BioBricked the f1 origin, lacI repressor, and lacI regulated T7 promoter, taking them from the protein expression vector pET29b+ from Novagen.  He also constructed and characterized 4 protein-based expression cassette's made from new AND old BioBricks.
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=== Gluten Degradation ===

Revision as of 06:09, 4 September 2011

Who we are

Undergraduate Team Members
Sean Wu
Washington David Zong.jpg
David Zong
Justin De Leon
Matthew Harger


Graduate Advisors
Matt Smith
Molecular and Cellular Biology
Ingrid Swanson
Microbiology
Rob Egbert
Electrical Engineering
Justin Siegel
Biomolecular Structure and Design
Jeremy Mills

Chris Eiben

Aaron Chevalier



Faculty Advisors
David Baker
Biochemistry
Eric Klavins
Electrical Engineering


Collaborators and Support
Washington Biochemistry.gif
Biochemistry
Lab space

Who did what

The teams were assembled during our winter quarter. During this term we went around to classes and had weekly meeting to introduce students to synthetic biology through a series of guest lectures. During the spring students participated in brainstorming projects related to the sponsoring Faculty advisors labs (Baker and Klavins) and came up with the project they wanted to carry out. Over the summer, students completed all of the experimental work, but worked closely with both graduate students and faculty advisors to plan the most pertinent experiments and make the most of our limited time.

Alkanes Production

Gibson Vectors

Gluten Degradation

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