Team:USTC-Software

From 2011.igem.org

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<body>
<body>
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<div id="header_wrapper">
 
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    <div id="header">
 
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  <div id="site_title">
 
-
            <h1><img src="https://static.igem.org/mediawiki/2011/b/b8/USTC_Software_iGEM_logo.jpg" alt="iGEM" width="173" height="150" /> </br> </br> USTC-Software </h1>
 
-
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-
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<ul id="nav">
 
-
<li><a class="on" href="https://2011.igem.org/Team:USTC-Software">Home</a></li>
 
-
 
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    <li><a href="https://2011.igem.org/Team:USTC-Software/project">Project</a>
 
-
<ul>
 
-
<li><a href="https://2011.igem.org/Team:USTC-Software/documents">Documents Parser & Models </a></li>
 
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<li><a href="#">Views</a>
 
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                                  <ul>
 
-
                                      <li><a href="https://2011.igem.org/Team:USTC-Software/aview">Assembly View</a></li>
 
-
                                      <li><a href="https://2011.igem.org/Team:USTC-Software/bview">Behavior View</a></li>
 
-
                                      <li><a href="https://2011.igem.org/Team:USTC-Software/nview">Network View</a></li>                     
 
-
                                  </ul>
 
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                                </li>
 
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                                <li><a href="#">Technology & Algorithm</a>
 
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                                  <ul>
 
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                                    <li><a href="https://2011.igem.org/Team:USTC-Software/parameter">Parameter Analysis</a></li>
 
-
                                    <li><a href="https://2011.igem.org/Team:USTC-Software/model">MoDeL</a></li>
 
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                                  </ul>
 
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                                </li>
 
-
                                   
 
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                                <li><a href="https://2011.igem.org/Team:USTC-Software/tutorial">Tutorial & Demo</a></li>
 
-
</ul>
 
-
</li>
 
-
 
-
 
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                <li><a href="https://2011.igem.org/Team:USTC-Software/notebook">Notebook</a></li>
 
-
 
-
<li><a href="https://2011.igem.org/Team:USTC-Software/team">Team</a>
 
-
                          <ul>
 
-
                            <li><a href="https://2011.igem.org/Team:USTC-Software/members">Members</a></li>
 
-
                            <li><a href="https://2011.igem.org/Team:USTC-Software/collaboration">Collaboration</a></li>
 
-
                            <li><a href="https://2011.igem.org/Team:USTC-Software/attribution">Attribution & Contributions</a></li>
 
-
                            <li><a href="https://2011.igem.org/Team:USTC-Software/acknowledgements">Acknowledgements</a></li>
 
-
                          </ul>
 
-
                </li>
 
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  <li><a href="https://2011.igem.org/Team:USTC-Software/human practice">Human Practice</a>             
 
-
  <ul>
 
-
    <li><a href="https://2011.igem.org/Team:USTC-Software/safety">Safety & Security</a></li>
 
-
    <li><a href="https://2011.igem.org/Team:USTC-Software/meetup">Meetup</a></li>
 
-
  </ul>
 
-
</li> 
 
-
 
-
<li><a class="last" href="https://2011.igem.org/Team:USTC-Software/download">Download</a></li>
 
-
           
 
-
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-
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<span lang="EN-US" xml:lang="EN-US">Our project this year is named Lachesis, which consists of the following</span>
<span lang="EN-US" xml:lang="EN-US">Our project this year is named Lachesis, which consists of the following</span>
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           <div><span lang="EN-US" xml:lang="EN-US">
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1.Automatic generation of biological reaction network simply from biobrick assemblys.<br/>
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<li>Automatic generation of biological reaction network simply from biobrick assemblys<a href=>see more</a>
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2.Data exchange,Reaction network visualization.<br/>
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<li>Data exchange,Reaction network visualization.<a href=>see more</a>
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3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.<br/>
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<li>Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.<a href=>see more</a>
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4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.<br/>
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<li>Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.<a href=>see more</a>
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Latest revision as of 12:42, 27 October 2011


Team:USTC-Software - 2011.igem.org

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Lachesis

Team

product

Our team is formed of a group of diligent students coming from various departments of USTC. In the School of Life Sciences, we devoted our perspirations to this project for nearly a year.

Models

product

Biological reaction networks, even small ones, contain a lot of species and reactions and, thus, are hard to build by hand. Our rule-based modeling approach aims at freeing human from such labor.

Human practice

product

We conducted a survey, during the National Science Week, to discover USTC students' opinion on Synthetic Biology.

Project

image

Our project this year is named Lachesis, which consists of the following

1.Automatic generation of biological reaction network simply from biobrick assemblys.
2.Data exchange,Reaction network visualization.
3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.
4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.


Sponsers



Vistor