Team:Freiburg/Notebook/19 July
From 2011.igem.org
Contents |
green light receptor
Testdigest with PvuI
Investigators:Julia
digested were Minipreps of Ligationreaction with CcaS.
The Enzym PvuI should cut into two fragments, one of 1666bp, the other 582 bp and vector at 2kb.
Protocol:
for Mastermix of 7 reactions:
30µl H2O
7µl NEB buffer 3
7µl BSA 10x
2µl PvuI
give 3µl of DNA sample to 7µl Mastermix, digest for one hour.
Add 1µl loading dye buffer(6x)a nd let the gel run.
Gelpicture
blue light receptor
Theoretical Gibson-Assembly
Investigators: Sandra, Sophie
Primer Degin for Blue light sensor (lovTAP) + trp promotor (BBa_K322999) and tetR Gen + tetO promotor (BBa_Q04400).
- LOVtap-Trp_up: gaattcgcggccgcttctagtcacacaggaaagtactatgt
- LOVtap-Trp_dw: tacttttatctaatctggacatctagtatttctcctctttgtcgataccctttttacgtg
- TetR-TetO_up: aaagaggagaaatactagatgtccagattag
- TetR-TetO_dw^: ctgcagcggccgctactag
^we also have another primer for this one, but we are not sure about the length/melting temperature. Might be changed.
red light receptor
NAME OF YOUR EXPERIMENT
Investigators:Jakob
Testdigest
Name: Jakob
| Date: 19.07.2011 |
Continue from Experiment :
16.07.2011 Miniprep | |
Project Name: Red light receptor |
For one reaction you need: For Mastermix: Number of samples+2extra
4μl | H2O | 24 | |
1μl | Buffer, NEB4 | 6 | |
1μl | BSA (10x) | 6 | |
0,5 μl | Enzym 1 | 2 | |
0,5 μl | Enzym 2 | 2 | |
3 μl | DNA | 3 |
10 μl total volume
Give 3 μl of DNA in an eppi and add 7μl of the mastermix.
Incubate for about 1h at 37°C.
Add 1 μl Loading dye buffer and load the gel.
Picture of the tesdigest: Expected sizes: L22+term(L21) ≈ 800 bp, L23+term(L21) ≈ 800 bp
L22a+b are correct
- To-do: send for sequencing
Miniprep
Name:
Jakob | Date:
19.07.2011 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Continue from Experiment: 18.07.2011
Trafo and Grow overnight at 37 °C | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Project Name:
Red light receptor
Why are you doing this experiment? Name the parts which you extract.
Describe your results and mistakes and measure the DNA concentration with the Nanodrop and note the results.
How did you label your probes and where are they stored?
Lysis cassetteNAME OF YOUR EXPERIMENTInvestigators:NAME
PrecipitatorPCR
PCR-Mixture for one Reaction: For a 50 µl reaction use
What program do you use? One set of probes was prepared and then split into 3 tubes each to test them at Annealingtemperatures 44C, 52C and 60C for the first 10 cycles. Then Annealingtemperature 60C for 25 cycles
S14+P18+P28 S14+P19+P28 S14+P20+P28 Stored in PCR product box Lane1 Quick Load Marker Lane2 44C S14+P18+P28 Lane3 44C S14+P19+P28 Lane4 44C S14+P20+P28 Lane5 52C S14+P18+P28 Lane6 52C S14+P19+P28 Lane7 52C S14+P20+P28 Lane8 60 S14+P18+P28 Lane9 60 S14+P19+P28 Lane10 60 S14+P20+P28
Procedure
Vector (ratio 1:3 to insert) Inserts (500ng)
Measured DNA-concentration with Nanodrop to calculate the volume of DNA to do the digestion:
Documentation: Why are you doing this experiment? Where are the samples stored? Name of samples, antibiotica resistance, vector used etc.
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