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References

1. D. Haft et al, “A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes,” PLoS Computational Biology, vol. 1, no. 6, pp. 474-483, 1 Nov. 2005.
2. R. Barrangou et al, “CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes,” Science, vol. 315, pp. 1709-1712, 23 Mar. 2007.
3. R. Sorek et al, “CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea,” Nature Reviews Microbiology, vol. 6, no. x, pp. 181-186, Mar. 2008.
4. S. Brouns et al, “Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes,” Science, vol. 321, pp. 960-964, 15 Aug. 2008.
5. S. Marraffini and E. Sontheimer, “CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA,” Science, vol. 322, pp. 1843-1845, 19 Dec. 2008.
6. J. Heidelberg et al, “Germ Warfare in a Microbial Mat Community: CRISPRs Provide Insights into the Co-Evolution of Host and Viral Genomes,” PLoS ONE, vol. 4, no. 1, 9 Jan. 2009.
7. C. Hale et al, “RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex,” Cell, vol. 139, pp. 945-956, 25 Nov. 2009.
8. J. van der Oost and S. Brouns, “RnAi: Prokaryotes get in on the Act,” Cell, vol. 139, pp. 863-865, 25 Nov. 2009.
9. L. Marraffini and E. Sontheimer, “Self vs. non-self discrimination during CRISPR RNA-directed immunity,” Nature, vol. 463, pp. 568-571, 13 Jan. 2010.
10. F. Karginov and G. Hannon, “The CRISPR system: small RNA-guided defense in bacteria and archaea,” Mol Cell, vol. 37, no. 1, pp. 7-19, 15 Jan. 2010.
11. A. Stern et al, “Self-targeting by CRISPR: gene regulation or autoimmunity?,” Trends in Genetics, vol. 26, no. 8, pp. 335-340, 1 Jul. 2010.
12. M. Aklujkar and D. Lovley, “Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus,” BMC Evolutionary Biology, vol. 10, 28 Jul. 2010.
13. J. He and M. Deen, “Heterogeneous diversity of spacers within CRISPR,” arXiv, 16 Aug. 2010.
14. E. Westra et al, “H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO,” Molecular Microbiology, vol. 77, no. 6, pp. 1380-1393, 18 Aug. 2010.
15. N. Held et al, “CRISPR Associated Diversity within a Population of Sulfolobus islandicus,” PLoS ONE, vol. 5, no. 9, 28 Sept. 2010.
16. K. Palmer and M. Gilmore, “Multidrug-Resistant Enterococci Lack CRISPR-cas,” mBio, vol. 1, no. 4, 12 Oct. 2010.
17. E. Sontheimer and L. Marraffini, “Slicer for DNA,” Nature, vol. 468, pp. 45-46, 4 Nov. 2010.
18. D. Pride et al, “Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time,” Genome Research, vol. 21, pp. 126-136, 13 Dec. 2010.
19. R. Garrett et al, “CRISPR-based immune systems of the Sulfolobales: complexity and diversity,” Biochem. Soc. Trans., vol. 39, pp. 51-57, 19 Jan. 2011.
20. F. Rezzonico et al, “Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora,” Applied and Environmental Microbiology, vol. 77, no. 11, pp. 3819-3829, 24 Mar. 2011.
21. E. Deltcheva et al, “CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III,” Nature, vol. 471, no. 7340, pp. 602-607, 30 Mar. 2011.
22. M. Jore et al, “Structural basis for CRISPR RNA-guided DNA recognition by Cascade,” Nature Structural & Molecular Biology, vol. 18, pp. 529-536, 3 Apr. 2011.
23. T. Nozawa et al, “CRISPR Inhibition of Prophage Acquisition in Streptococcus pyogenes,” PLoS ONE, vol. 6, no. 5, 6 May 2011.
24. K. S. Makarova et al, “Evolution and classification of the CRISPR–Cas systems,” Nature Reviews Microbiology, vol. 9, pp. 467-477, 9 May 2011.
25. D. Sashital et al, “An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3,” Nature Structural & Molecular Biology, vol. 18, pp. 680-687, 15 May 2011.
26. E. Gesner et al, “Recognition and maturation of effector RNAs in a CRISPR interference pathway,” Nature Structural & Molecular Biology, vol. 18, no. 6, pp. 688-692, 15 May 2011.
27. C. Skennerton et al, “Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System,” PLoS ONE, vol. 6, no. 5, 18 May 2011.
28. W. Fricke et al, “Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-mediated Adaptive Sublineage Evolution,” J. Bacteriology, 20 May 2011.
29. E. Semenova et al, “Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence,” PNAS, 6 Jun. 2011.