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From 2011.igem.org

Life = 42

To-Do List

• read through Friedland abstract/paper
• read through Puppeteer/PuppetShow powerpoint
• read through Puppeteer/related abstract
• peruse GroovyScripter code/structure
• figure out how to seamlessly integrate Python script-compiling within fluid GUI
• design aforementioned fluid GUI

The Backburner

• Protocol/Assembly Manager
  • Ideally, we should have a protocol graph that would be a generic form of managing an arbitrary combination of protocols.
  • The protocol graph should contain vertices, which are either operands or protocols/operations.
  • The graph should also connect operands to protocols.
  • Given access to a library of protocol specifications, one should be able to give an expression or an explicit protocol graph for parsing purposes.
  • One should be able to use PuppetShow (see powerpoint) to create an implicit protocol graph.
  • One should be able to reconfigure protocol graphs for optimization, etc.
  • Questions
    • How do we want to construct this graph?
    • Does the user input an expression?
    • Should we have an interactive GUI to help user create custom protocol graphs?