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Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. (1997) 25(17): 3389-3402 doi:10.1093/nar/25.17.3389.
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Altschul, S. F., Wootton, J. C., Gertz, E. M., Agarwala, R., Morgulis, A., Schäffer, A. A., et al. (2005). Protein database searches using compositionally adjusted substitution matrices. FEBS J, 272, 5101-5109. This is an unofficial translation of an article that appeared in a Wiley publication. The publisher has not endorsed this translation. The article is published under the [http://creativecommons.org/licenses/by-nc/3.0/ Attribution-NonCommercial 3.0 Unported Creative Commons] license.
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Zheng Zhang, Scott Schwartz, Lukas Wagner and Webb Miller. A Greedy Algorithm for Aligning DNA Sequences. Journal of Computational Biology. February 2000, 7(1-2): 203-214. doi:10.1089/10665270050081478.
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