Team:Paris Bettencourt/RISC

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Team IGEM Paris 2011

Risc project

The risc is a long term project. It consist in a Database of pre-constructed pattern describing minimalist biological behaviours.
So, it introduce the concept of usualy used Biobrick's pattern database based on the frequency of biobrick construct in Igem team.

compilation

This project is based on an other project witch consist in using a high level behavious langage for synthetic biology.

we will use those minimalist patterns by combination and substitution to simulate the model described by the langage.

Combination

Substitution

Our approach is to propose to creat a comportemental description of those patterns instead of a structural design. This to facilitate the usage of these construct. this idea is different from other modeling method by not trying to modelize biologic systems but having the biologic system simulating the model(doing possibly more than the model but not less).

We starded by analysing older igem project looking for common used biobrick circuit and define the behaviour of those circuits.

Example of patterns

Mechanism Pattern description Pattern code
Transposon
  • in : one sequence with 2 extraction site
  • out : 1 sequence extracted and the original sequence regenerated
  • behaviours : extract a part of a sequence and potentialy active another
Phage

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