Team:Freiburg/Notebook/18 August

From 2011.igem.org

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Procedure:
 
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The following procedures are carried out at a room temperature. All centrifugation steps should be performed between 11,000 – 16,000 x g
 
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1.Centrifuge 0.5 – 5 ml of bacterial culture in a clear 1.5 ml tube at full speed for 15 – 20 seconds in a microcentrifuge. Discard supernatant.
 
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2.Add 200 µl of '''P1 Buffer '''(Red) to the tube and resuspend pellet completely (i.e., by vortexing or pipetting).
 
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3.Add 200 µl of '''P2 Buffer''' (Green) and mix by inverting the tube 2 – 4 times. Cells are completely lysed when the solution appears clear, purple and viscous. '''Proceed to the next step within 1-2 minutes'''.
 
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4.Add 400 µl of '''P3 Buffer''' (Yellow) and mix gently but thoroughly. Do not vortex. The sample will turn yellow when the neutralization is complete. Allow the lysate to incubate at room temperature for 1-2 minutes.
 
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5. Centrifuge sample(s) for 2 minutes.
 
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6.Place a '''Zymo-Spin IIN''' column in a '''Collection Tube''' and transfer the supernatant from step 5into the '''Zymo-Spin IIN''' column. When pipetting the supernatant be careful not to disturb the green pellet to avoid transferring anz cellular debris to the column.
 
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7.Centrifuge the '''Zymo-Spin IIN/Collection Tube''' assembly for 30 seconds.
 
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8.Discard the flow-through in the '''Collection Tube, '''making sure the flow-through does not touch the bottom of the column. Return the '''Zymo-Spin IIN''' column to the '''Collection Tube'''
 
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9.Add 200 µl of '''Endo-Wash-Buffer''' to the column and centrifuge for 30 seconds.
 
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10. Add 400 µl of '''Plasmid Wash Buffer''' to the column. Centrifuge for 1 minute.
 
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11. Transfer the column into a clean 1.5 ml microcentrifuge tube and then add 30 µl of '''DNA Elution Buffer''' to the column. Centrifuge for 30 seconds to elute the plasmid DNA.
 

Revision as of 13:04, 18 August 2011


This is the wiki page
of the Freiburger student
team competing for iGEM 2011.
Thank you for your interest!

Contents

green light receptor

NAME OF YOUR EXPERIMENT

Investigators:NAME


blue light receptor

NAME OF YOUR EXPERIMENT

Investigators:NAME



red light receptor

NAME OF YOUR EXPERIMENT

Investigators:NAME



Lysis cassette

NAME OF YOUR EXPERIMENT

Investigators:NAME


Precipitator

Miniprep

zymo Kit


Name:Sophie


Date:18.08.11
Continue from Experiment: Cloning: ε5 was empty and the products from the cloning of 12.08.11 contain GFP-pbd too. (Date): 12.08.11

(Name): Sophie

Project Name: inducible Promoter with pbd with cm-vector


Documentation:

Why are you doing this experiment? Name the parts which you extract.

ε5 was empty and the products from the cloning of 12.08.11 contain GFP-pbd too.

Name of the parts: GFP-pbd 4 4 4, GFP-pbd 4 1 3, GFP-pbd 6 6 8, GFP-pbd 4 2 2


Describe your results and mistakes and measure the DNA concentration with the Nanodrop and note the results.


GFP-pbd 4 4 4: 164,1 ng/µl

GFP-pbd 4 1 3: 100,8 ng/µl

GFP-pbd 6 6 8: 163,5 ng/µl

GFP-pbd 4 2 2: 144,4 ng/µl

How did you label your probes and where are they stored?


Labelled GFP-pbd 4 4 4, GFP-pbd 4 1 3, GFP-pbd 6 6 8, GFP-pbd 4 2 2

stored in -20 until sequencing

Testdigest


Name: Sophie


Date: 18.08.11
Continue from Experiment: Miniprep (Date): 18.08.11

(Name): Sophie

Project Name:inducible promoter for pbd with cm-vector

For one reaction you need: For Mastermix: Number of samples+2extra


4μl H2O 20
1μl Buffer, NEB4 5
1μl BSA (10x) 5
0,5 μl Enzym 1 2,5
0,5 μl Enzym 2 2,5
3 μl DNA

10 μl total volume


Give 3 μl of DNA in an eppi and add 7μl of the mastermix.

Incubate for about 1h at 37°C.


Add 1 μl Loading dye buffer and load the gel.

Take a picture of the gel, print picture and label the lanes!


                       

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