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JULY: WEEK 5
July, 25th
Red colonies were observed from E36 plates, suggesting that the transformation was successful. A colony was picked form the plate. Digestions of previously purified plasmids were performed for ligations:
Reactions were incubated at 37°C for three hours while a small-size and a medium-size agarose gel were prepared according to protocols. In the afternoon gel electrophoresis was performed. Immagine della corsa su gel After gel extraction, digested DNA was quantified:
Previously purified plasmids carrying either E17, or E18, or E19 or E20 part were inoculated in order to amplify them for the subsequent transformation in MGZ1 cells (E' GIUSTO?): July, 26th
Plasmids containing either E17, or E18, or E19, or E20 or E36 part were extracted with MiniPrep kit from ON saturated cultures; purified DNA was quantified with NanoDrop Spectrophotometer:
Digestion of E36 part carrying plasmid was performed for ligation:
Digestions of previously purified plasmids were performed for ligations:
Reactions were incubated at 37°C for three hours while a small-size agarose gel was prepared according to protocols. In the afternoon gel electrophoresis was performed. Immagine della corsa su gel After gel extraction, digested DNA was quantified:
Then ligations were performed in a final volume of 10 μl:
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Team:UNIPV-Pavia/Calendar/July/settimana5
From 2011.igem.org
(Difference between revisions)
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Previously purified plasmids carrying either E17, or E18, or E19 or E20 part were inoculated in order to amplify them for the subsequent transformation in MGZ1 cells (E' GIUSTO?): | Previously purified plasmids carrying either E17, or E18, or E19 or E20 part were inoculated in order to amplify them for the subsequent transformation in MGZ1 cells (E' GIUSTO?): | ||
</p> | </p> | ||
- | + | </br> | |
<p><a name="indice"/> | <p><a name="indice"/> | ||
Line 219: | Line 219: | ||
</center> | </center> | ||
+ | <p> | ||
+ | Digestions of previously purified plasmids were performed for ligations: | ||
+ | </p> | ||
+ | |||
+ | <center> | ||
+ | <table border="1"> | ||
+ | <tr> | ||
+ | <td><b>Plasmid</b></td> | ||
+ | <td><b>Kind</b></td> | ||
+ | <td><b>DNA (μl)</b></td> | ||
+ | <td><b>H<small><sub>2</sub></small>O (μl)</b></td> | ||
+ | <td><b>Enzyme 1 (μl)</b></td> | ||
+ | <td><b>Enzyme 2 (μl)</b></td> | ||
+ | <td><b>Buffer H (μl)</b></td> | ||
+ | <td><b>Final Volume (μl)</b></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>E36</td> | ||
+ | <td>Insert</td> | ||
+ | <td>13</td> | ||
+ | <td>7.5</td> | ||
+ | <td>1 Xbal</td> | ||
+ | <td>1 Pstl</td> | ||
+ | <td>2.5</td> | ||
+ | <td>25</td> | ||
+ | </tr> | ||
+ | |||
+ | |||
+ | </table> | ||
+ | </center> | ||
+ | |||
+ | <p> | ||
+ | Reactions were incubated at 37°C for three hours while a small-size agarose gel was prepared according to protocols. | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | In the afternoon gel electrophoresis was performed. | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | Immagine della corsa su gel | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | After gel extraction, digested DNA was quantified: | ||
+ | </p> | ||
+ | |||
+ | <center> | ||
+ | <table border="1"> | ||
+ | <tr> | ||
+ | <td><b>Part</b></td> | ||
+ | <td><b>DNA (ng/μl)</b></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>E36 (S-P)</td> | ||
+ | <td>-</td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | </center> | ||
+ | |||
+ | <p> | ||
+ | Then ligations were performed in a final volume of 10 μl: | ||
+ | </p> | ||
+ | |||
+ | <center> | ||
+ | <table border="1"> | ||
+ | <tr> | ||
+ | <td><b>Ligation Name</b></td> | ||
+ | <td><b>Vector</b></td> | ||
+ | <td><b>Vector volume (μl)</b></td> | ||
+ | <td><b>Insert</b></td> | ||
+ | <td><b>Insert volume (μl)</b></td> | ||
+ | <td><b>Buffer (μl)</b></td> | ||
+ | <td><b>T4 Ligase (μl)</b></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td><b>E41</b></td> | ||
+ | <td>E36 (S-P)</td> | ||
+ | <td>4</td> | ||
+ | <td>E3 (X-P)</td> | ||
+ | <td>4.1</td> | ||
+ | <td>1</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | |||
+ | |||
+ | <tr> | ||
+ | <td><b>E42</b></td> | ||
+ | <td>E36 (S-P)</td> | ||
+ | <td>3.5</td> | ||
+ | <td>E4 (X-P)</td> | ||
+ | <td>4.5</td> | ||
+ | <td>1</td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | </center> | ||
Revision as of 20:36, 28 July 2011