Team:UNIPV-Pavia/Calendar/June/settimana5

From 2011.igem.org

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In the morning all plates showed colony; for each one we picked one colony and inoculated it in 1 ml of liquid LB with the proper antibiotic (ampicillin for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</a> and <a href='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</a>, kanamycin for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</a>). Cultures were grown at 37°C, 220 rpm.
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In the morning all plates showed colonies (<a href='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</a> showed light red colonies); for each one we picked one colony and inoculated it in 1 ml of liquid LB with the proper antibiotic (ampicillin for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</a> and <a href='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</a>, kanamycin for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</a>). Cultures were grown at 37°C, 220 rpm.
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In the afternoon glycerol stock were prepared (750 ul of bacteria and 250 ul of 80% glycerol); then cultures were refilled with 5 ml of liquid LB with the proper antibiotic and incubated ON at 37°C, 220 rpm.
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In the afternoon glycerol stocks were prepared (750 ul of bacteria and 250 ul of 80% glycerol) except for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</a> which was not sufficiently grown (we let it grow until next morning); then cultures were refilled with 5 ml of liquid LB with the proper antibiotic and incubated ON at 37°C, 220 rpm.
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<a name="June.2C_30th"></a><h2> <span class="mw-headline">June, 30th</span></h2>
<a name="June.2C_30th"></a><h2> <span class="mw-headline">June, 30th</span></h2>
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<p>PhaP-1 and PhaP-2 plates showed colonies!!
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A colony from each plate was picked and used to infect 1ml LB+Kan. Liquid cultures of PhaP-1 and PhaP-2 were grown for 6 hours at 37°C 220 rpm and then used to prepare glycerol stocks. Remaining liquid cultures were re-filled with 5 ml LB+Kan an grown ON at 37°C 220 rpm for tomorrow MiniPrep.
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All cultures were saturated; glycerol stock for <a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</a> was prepared.
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Glycerol stocks of PhaP-1 and PhaP-2 are stored at -80°C in the <i>iGEM 2010 Registry</i> box.
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</p><p>Ligations were heated at 65°C for 5 minutes to inactivate ligase ad then tranformed in E. coli TOP10 home made competent cells. Plates were incubated ON at 37°C (we decided to incubate plates 5 hours longer than usual, because cell growth was already slower for I6).
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Plasmids were extracted with MiniPrep kit; purified DNA was quantified with NanoDrop Spectrophotometer:
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<center>
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<table border="1">
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    <tr>
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      <td><b>DNA</b></td>
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      <td><b>ng/ul</b></td>
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  </tr>
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  <tr>
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      <td><a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</a></td>
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      <td>60.8</td>
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  </tr>
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  <tr>
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      <td><a href='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</a></td>
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      <td>75.7</td>
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  </tr>
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  <tr>
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      <td><a href='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</a></td>
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      <td>63.6</td>
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  </tr>
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  <tr>
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      <td><a href='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</a></td>
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      <td>17.5</td>
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  </tr>
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</table>
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</center>
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<p>
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<a href='http://partsregistry.org/wiki/index.php/Part:BBa_B0030'>BBa_B0030</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_B0031'>BBa_B0031</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_B0032'>BBa_B0032</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_B0034'>BBa_B0034</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_B0015'>BBa_B0015</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_pSB4C5'>pSB4C5</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_I13501'>BBa_I13501</a>, <a href='http://partsregistry.org/wiki/index.php/Part:BBa_I13507'>BBa_I13507</a> were inoculated from freezer glycerol stocks and grown ON at 37°C, 220 rpm for MiniPrep.
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Revision as of 21:06, 13 July 2011

UNIPV TEAM 2011

March
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April
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May
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June
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July
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August
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September
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October
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JUNE: WEEK 5

June, 28th

First time in wet lab

11 LB agar plates, 35 LB agar + Amp plates and 15 LB agar + Cm 12.5 were prepared.

  • BBa_C0060 was resuspended from iGEM 2011 kit distribution, Plate 1, well 4K in 15 ul of ddH2O
  • BBa_C0061 was resuspended from iGEM 2011 kit distribution, Plate 1, well 4M in 15 ul of ddH2O
  • BBa_J04450 was resuspended from iGEM 2011 kit distribution, Plate 1, well 5E in 15 ul of ddH2O
  • BBa_K081022 was resuspended from iGEM 2011 kit distribution, Plate 2, well 12N in 15 ul of ddH2O

For each of them 1 ul was transformed in 100 ul of home-made TOP10 competent cells. Transformants were plated on LB agar plates with the right antibiotic and incubated ON at 37°C.

June, 29th

In the morning all plates showed colonies (BBa_J04450 showed light red colonies); for each one we picked one colony and inoculated it in 1 ml of liquid LB with the proper antibiotic (ampicillin for BBa_C0060, BBa_C0061 and BBa_K081022, kanamycin for BBa_J04450). Cultures were grown at 37°C, 220 rpm.

In the afternoon glycerol stocks were prepared (750 ul of bacteria and 250 ul of 80% glycerol) except for BBa_C0061 which was not sufficiently grown (we let it grow until next morning); then cultures were refilled with 5 ml of liquid LB with the proper antibiotic and incubated ON at 37°C, 220 rpm.

June, 30th

All cultures were saturated; glycerol stock for BBa_C0061 was prepared.

Plasmids were extracted with MiniPrep kit; purified DNA was quantified with NanoDrop Spectrophotometer:

DNA ng/ul
BBa_C0060 60.8
BBa_C0061 75.7
BBa_K081022 63.6
BBa_J04450 17.5

BBa_B0030, BBa_B0031, BBa_B0032, BBa_B0034, BBa_B0015, pSB4C5, BBa_I13501, BBa_I13507 were inoculated from freezer glycerol stocks and grown ON at 37°C, 220 rpm for MiniPrep.