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Team:ETH Zurich/Project
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We will place our genetically engineered cells in a microfluidics channel and will supply them with a constant flow of Acetaldehyde. We will also design our cells to degrade Acetaldehyde, so that a concentration gradient of Acetaldehyde is created throughout the channel. | We will place our genetically engineered cells in a microfluidics channel and will supply them with a constant flow of Acetaldehyde. We will also design our cells to degrade Acetaldehyde, so that a concentration gradient of Acetaldehyde is created throughout the channel. | ||
| - | Since our cells detect only a certain concentration of Acetaldehyde, as the gradient moves through the channel, the GFP stripe that certain cells produce will also "move along". Furthermore, our system will act as a low pass filter which produces AHL molecules once the Acetaldehyde concentration is below a certain threshold (the lower threshold for the previously described band-pass filter). Thus, cells that are to the right of the GFP stripe will produce AHL. As the stripe moves through the channel, AHL will be always produced to its right and will diffuse in the channel. Moreover, we feed back some of the produced AHL to the channel again, by a "recycling channel", so that even the cells to the left of the stripe are supplied with AHL. As soon as the stripe moves until the end of the channel, no more cells will produce AHL and the recycling will cease. The absence of AHL will trigger RFP production by all the cells. So, in our channel we should be able to see a moving green stripe and a red flash everywhere once the stripe moves to the end of it. | + | Since our cells detect only a certain concentration of Acetaldehyde, as the gradient moves through the channel, the GFP stripe that certain cells produce will also "move along". Furthermore, our system will act as a low pass filter which produces AHL molecules once the Acetaldehyde concentration is below a certain threshold (the lower threshold for the previously described band-pass filter). Thus, cells that are to the right of the GFP stripe will produce AHL. As the stripe moves through the channel, AHL will be always produced to its right and will diffuse in the channel. Moreover, we feed back some of the produced AHL to the channel again, by a "recycling channel", so that even the cells to the left of the stripe are supplied with AHL. As soon as the stripe moves until the end of the channel, no more cells will produce AHL and the recycling will cease after a while. The absence of AHL will trigger RFP production by all the cells. So, in our channel we should be able to see a moving green stripe and a red flash everywhere once the stripe moves to the end of it. |
== Project Details== | == Project Details== | ||
Revision as of 13:29, 12 July 2011
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Overall project
Idea
Our project focuses on the detection of smoke from the air by E.Coli bacteria and monitoring its concentration visually by flashes of various lights. Our system will act as a smoke sensor and “partymeter”, telling us how a certain party progresses (under the creative assumption that the progress of the party is measured by the amount of smoke in the air).
Project description
We modify our cells so that they can detect Acetaldehyde, which is a substance found in the cigarete smoke. Upon binding of Acetaldehyde to AlcR, AlcR acts as an inhibitor for a gene transcription. This is where our genetically engineered circuit? / pathway? starts. With a number of inhibitors and activators, we created our circuit such that it gives rise to a GFP product once a certain concentration of Acetaldehyde is detected from the air. Thus, our circuit acts as a band-pass-filter for Acetaldehyde concentration.
We will place our genetically engineered cells in a microfluidics channel and will supply them with a constant flow of Acetaldehyde. We will also design our cells to degrade Acetaldehyde, so that a concentration gradient of Acetaldehyde is created throughout the channel.
Since our cells detect only a certain concentration of Acetaldehyde, as the gradient moves through the channel, the GFP stripe that certain cells produce will also "move along". Furthermore, our system will act as a low pass filter which produces AHL molecules once the Acetaldehyde concentration is below a certain threshold (the lower threshold for the previously described band-pass filter). Thus, cells that are to the right of the GFP stripe will produce AHL. As the stripe moves through the channel, AHL will be always produced to its right and will diffuse in the channel. Moreover, we feed back some of the produced AHL to the channel again, by a "recycling channel", so that even the cells to the left of the stripe are supplied with AHL. As soon as the stripe moves until the end of the channel, no more cells will produce AHL and the recycling will cease after a while. The absence of AHL will trigger RFP production by all the cells. So, in our channel we should be able to see a moving green stripe and a red flash everywhere once the stripe moves to the end of it.
