Team:Harvard/ZF Binding Site Finder

From 2011.igem.org

(Difference between revisions)
Line 184: Line 184:
var ntpCheck = /[GCTAN]{9}/;
var ntpCheck = /[GCTAN]{9}/;
-
/*
+
if (!(bottomzf.match(ntpCheck))||
-
if (!(bottomzf.match(ntpCheck)&&
+
  !(topzf.match(ntpCheck))||
-
  topzf.match(ntpCheck)&&
+
  !(bottomzf.length=="9")||
-
  (bottomzf.length=="9")&&
+
  !(topzf.length=="9"))){
-
  (topzf.length=="9"))){
+
alert("You must enter a valid sequence of nine nucleotides containing G,T,C,A, or N.");
alert("You must enter a valid sequence of nine nucleotides containing G,T,C,A, or N.");
return;
return;
}
}
-
*/
 
//transform bottom zf to reverse complement
//transform bottom zf to reverse complement

Revision as of 14:44, 9 July 2011

iGEM 2011 Zinc Finger Binding Site Finder

iGEM 2011 Zinc Finger Binding Site Finder

Justin Chew

Bottom Zinc Finger Array:

Top Zinc Finger Array:

Nucleotide Gap: