Team:Kyoto/Digestion/Modeling

From 2011.igem.org

(Difference between revisions)
(Stable phase model)
(Modeling)
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='''Modeling'''=
='''Modeling'''=
We preformed modeling to improve usability of the results of Team Digestion.
We preformed modeling to improve usability of the results of Team Digestion.
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We modeled the relationship of time and the concentration of E.coli, chitinase and N-acetylglucosamin.
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The aim of this modeling is creation of the relationship of time and the concentration of E.coli, chitinase and N-acetylglucosamin.
=='''Stable phase model'''==
=='''Stable phase model'''==

Revision as of 21:27, 5 October 2011

Modeling

We preformed modeling to improve usability of the results of Team Digestion. The aim of this modeling is creation of the relationship of time and the concentration of E.coli, chitinase and N-acetylglucosamin.

Stable phase model

At first, we defined these things. In these premises

  • chitinase in medium isn't decomposed
  • E.coli don't digest N-acetylgulcosamin
  • chitin as substrate of chitinase is sufficient for reaction with chitinase
  • E.coli don't grow.


Modeling Equation1.png


Two under equations of this figure show the production of citinase by E.coli and the decomposition reaction of chitin. In this decompositon reaction, the concentration of chitin isn't related because chitin is solid and don't dissolve in water.
We sought the answers of these equation by followig procedures.


Modeling Equation2.png


From these answers, we can get this graph.


Modeling Modeling1.png


Modeling Equation4.png
Modeling Equation5.png
Modeling Equation6.png
File:Modeling Equation7.png

Exponetial phase model

File:Modeling Figure1.png
File:Modeling Figure2.png