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Team:Edinburgh/Links
From 2011.igem.org
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Useful information/tools can be found on the following pages: | Useful information/tools can be found on the following pages: | ||
| - | + | ===Biology methods=== | |
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* [http://www.openwetware.org/wiki/French_Lab Open Wetware: French Lab protocols] | * [http://www.openwetware.org/wiki/French_Lab Open Wetware: French Lab protocols] | ||
* [http://jbei-exwebapp.lbl.gov/j5/j5manual/pages/1.html J5: overview of automated DNA assembly] | * [http://jbei-exwebapp.lbl.gov/j5/j5manual/pages/1.html J5: overview of automated DNA assembly] | ||
| + | |||
| + | ===Genomics tools=== | ||
| + | |||
| + | * [http://www.ebi.ac.uk/Tools/emboss/transeq/ Transeq] (nucleotide to protein conceptual translation) | ||
| + | * [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST: Basic Local Alignment Search Tool] | ||
| + | * [http://www.ebi.ac.uk/Tools/psa/ EMBOSS Needle] (and other pairwise alignment tools) | ||
| + | * [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M) | ||
* [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting] | * [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting] | ||
| + | |||
| + | ===iGEM=== | ||
| + | |||
* [https://igem.org/Main_Page iGEM] | * [https://igem.org/Main_Page iGEM] | ||
** [https://2011.igem.org/Main_Page iGEM 2011] | ** [https://2011.igem.org/Main_Page iGEM 2011] | ||
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** [http://partsregistry.org/Help Help] | ** [http://partsregistry.org/Help Help] | ||
** [http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix] | ** [http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix] | ||
| + | * [http://www.wired.com/wired/archive/13.01/mit.html Life Reinvented] (article on the origins of iGEM) | ||
| + | |||
| + | ===Modeling=== | ||
| + | |||
* [http://kappalanguage.org/ The Kappa Biological Modeling Language] | * [http://kappalanguage.org/ The Kappa Biological Modeling Language] | ||
** [http://www.demonsoft.org/SpatialKappa/ Spatial Kappa] | ** [http://www.demonsoft.org/SpatialKappa/ Spatial Kappa] | ||
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* [https://www.see.ed.ac.uk/auth/teaching/courses/matlab/ MATLAB intro] | * [https://www.see.ed.ac.uk/auth/teaching/courses/matlab/ MATLAB intro] | ||
| + | |||
| + | ===Misc=== | ||
| + | |||
| + | * [https://www.wiki.ed.ac.uk/display/CFrenchLabwiki/iGEM11TeamInfo The old Wiki] (do not use) | ||
* [http://www.w3schools.com/css/default.asp CSS guide] | * [http://www.w3schools.com/css/default.asp CSS guide] | ||
{{:Team:Edinburgh/Template:Navbox}} | {{:Team:Edinburgh/Template:Navbox}} | ||
Revision as of 13:45, 29 June 2011
Useful information/tools can be found on the following pages:
Contents |
Biology methods
- [http://www.openwetware.org/wiki/French_Lab Open Wetware: French Lab protocols]
- [http://jbei-exwebapp.lbl.gov/j5/j5manual/pages/1.html J5: overview of automated DNA assembly]
Genomics tools
- [http://www.ebi.ac.uk/Tools/emboss/transeq/ Transeq] (nucleotide to protein conceptual translation)
- [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST: Basic Local Alignment Search Tool]
- [http://www.ebi.ac.uk/Tools/psa/ EMBOSS Needle] (and other pairwise alignment tools)
- [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M)
- [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting]
iGEM
- iGEM
- [http://partsregistry.org/Main_Page Parts Registry]
- [http://partsregistry.org/Help Help]
- [http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix]
- [http://www.wired.com/wired/archive/13.01/mit.html Life Reinvented] (article on the origins of iGEM)
Modeling
- [http://kappalanguage.org/ The Kappa Biological Modeling Language]
- [http://www.demonsoft.org/SpatialKappa/ Spatial Kappa]
- MATLAB intro
Misc
- The old Wiki (do not use)
- [http://www.w3schools.com/css/default.asp CSS guide]
This was the old Navbox for Edinburgh; now it's obsolete...
- Edinburgh 2011
- Project documentation: Project - BioSandwich - Parts - Modeling - Lab Notebook - Safety - Team - Attributions
- Pages for members: Wiki Watch - Useful Links - Sequences - Primers - Practices - Official Profile (has email addresses)
- (edit this navigation box)
