Team:UT Dallas/killbots intro

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<h2>Introduction</h2><br><br>
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The kill switch mechanism is based on the properties of the colicin protein. A colicins are a
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type of toxin proteins produced by and toxic to some strains of Escherichia coli. Colicins are
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produced by bacteria to reduce competition from other bacterial strains. They do so by binding
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to outer membrane receptors, and using them to translocate to the cytoplasm or cytoplasmic
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membrane via penocytosis. Once inside, they exert their cytotoxic effect on the cytoplasmic
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membrane (depolarisation), DNase activity, RNase activity, and more.
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-Cascales E, Buchanan SK, Duche D, Kleanthous C, Lloubes R, et al. Colicin biology.
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Microbiol Mol Biol Rev. 2007;71:158–229.
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The pathway works via a two plasmid system: the first plasmid is responsible for sensing
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an environmental stimulus, the second one is responsible for creating the colicin to lyse the
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cells in the environment. Therefore, the first plasmid must trigger the next one to work. This is
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done in this experiment by creating a LuxI protein in the first plasmid. This protein is able to
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create diffuse-able acyl-homoserine lactones (AHLs) which are naturally involved with quorum
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sensing bacterial communication mechanisms. However, the second plasmid uses the AHL
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transcriptional receptors to create the colicin protein. As a result, the kill switch is engaged and
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results in non discriminatory cell death.
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-Parsek MR, Val DL, Hanzelka BL, Cronan JE, Jr, Greenberg EP. Acyl homoserine-lactone
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quorum-sensing signal generation. Proc Natl Acad Sci U S A. 1999;96:4360–4365.
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Step 1 : PcstA+RBS+LuxI+double terminator
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PcstA is a glucose repressible promoter system. Low glucose concentration results in increased
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activity by adenylate cyclase. cAMP binds to the cAMP receptor protein, which, in its bound
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form, is able to associate with the promoter and promote transcription of the LuxI downstream
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gene. The LuxI is an enzyme that creates acyl-homoserine lactones (AHL) from normal cell
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metabolites. All LuxI proteins direct the synthesis of specific AHLs and show sequence
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similarity.
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Registry source:
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LuxI description source: http://partsregistry.org/wiki/index.php?title=Part:BBa_C0061
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http://partsregistry.org/Part:BBa_J23039
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Step 2 : AHL Inducible Colicin E2 with GFP
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This part is inducible with AHL to fluoresce green and activate the colicin genes. Specifically,
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there is a LuxR receptor which is activated by homoserine lactones and results in transpiration of
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downstream genes such as Colicin. This protien is a type of bacteriocin produced by and toxic to
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some strains of Escherichia coli such as strain BL21.
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Revision as of 23:21, 28 September 2011