Team:UT Dallas/NimiTrial

From 2011.igem.org

(Difference between revisions)
Line 1: Line 1:
 +
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
 +
<html>
<html>
-
<head>
+
<script type="text/javascript">
 +
 
 +
// Copyright 2006-2007 javascript-array.com
 +
 
 +
var timeout = 500;
 +
var closetimer = 0;
 +
var ddmenuitem = 0;
 +
 
 +
// open hidden layer
 +
function mopen(id)
 +
{
 +
// cancel close timer
 +
mcancelclosetime();
 +
 +
// close old layer
 +
if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
 +
 +
// get new layer and show it
 +
ddmenuitem = document.getElementById(id);
 +
ddmenuitem.style.visibility = 'visible';
 +
 +
}
 +
// close showed layer
 +
function mclose()
 +
{
 +
if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
 +
}
 +
 +
// go close timer
 +
function mclosetime()
 +
{
 +
closetimer = window.setTimeout(mclose, timeout);
 +
}
 +
 +
// cancel close timer
 +
function mcancelclosetime()
 +
{
 +
if(closetimer)
 +
{
 +
window.clearTimeout(closetimer);
 +
closetimer = null;
 +
}
 +
}
 +
 
 +
// close layer when click-out
 +
document.onclick = mclose;
 +
 
 +
</script>
<style>
<style>
-
div.container{
+
body{
-
background-image:url("http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/PageContainer-1.png");
+
background-color: #808080;
-
background-repeat: repeat-y;
+
}
-
width: 975px;
+
 
-
float: left;
+
p {
 +
font-family: Verdana, sans-serif;
 +
}
 +
 
 +
a {
 +
font-family: Verdana, sans-serif;
 +
}
 +
 
 +
li{
 +
font-family: Verdana, sans-serif;
 +
}
 +
 
 +
h2{
 +
color:#0066CC;
 +
}
 +
 
 +
h4{
 +
color:#003366;
 +
}
 +
 
 +
 
 +
img.bannerImage{
 +
margin-top: -56px;
margin-left: -5px;
margin-left: -5px;
 +
z-index: 0;
 +
}
 +
 +
 +
div.menuBar{
 +
margin-left: -5px;
 +
width: 920px;
 +
height: 25px;
margin-bottom: 20px;
margin-bottom: 20px;
-
}
+
margin-top: -45px;
 +
float: left;
 +
}
-
div.sidebar{
+
 
-
width: 235px;
+
#nav {
 +
margin: 0;
 +
padding: 0;
 +
z-index: 30;
 +
position: relative;
 +
}
 +
 +
#nav li {
 +
margin: 0;
 +
padding: 0;
 +
list-style: none;
float: left;
float: left;
-
margin-left: 14px;
+
font: bold 12px verdana;
-
margin-right: 10px;
+
}
-
padding-left: 0px;
+
 
-
margin-top: 10px;
+
#nav li a {
-
margin-bottom: 20px;
+
display: block;
 +
margin: 0 0 0 0;
 +
padding: 6px 10px;
 +
width: 82px;
 +
background: #8bff35;
 +
color: #000;
 +
text-align: center;
 +
text-decoration: none;
 +
 
 +
border-right: 2px solid #131313;
}
}
-
div.sidebar h1{
+
#nav li .menuend{
-
color:#7b54cc;
+
border-right: 2px solid #8bff35;
 +
width: 66px;
}
}
-
div.sidebar ul li a{
 
-
color:#7b54cc;
 
-
}
 
-
+
#nav li a:hover {
-
div.mainbody{
+
color: #FFF;
-
width: 670px;
+
-
float: left;
+
-
margin-left: 20px;
+
-
margin-right: 20px;
+
-
margin-top: 10px;
+
}
}
-
#bodytitle h1{
+
#nav div {
-
color:#54bcf8;
+
position: absolute;
 +
visibility: hidden;
 +
margin: 0;
 +
padding: 0;
 +
background: #131313;
 +
}
 +
 
 +
#nav div a {
 +
position: relative;
 +
display: block;
 +
margin: 0;
 +
padding: 5px 10px;
 +
width: 150px;
 +
white-space: nowrap;
 +
text-align: left;
 +
text-decoration: none;
 +
 
 +
left: -2px;
 +
background: #8bff35;
 +
color: #000;
 +
font: 12px Verdana;
 +
border-left: 2px solid #131313;
 +
border-right: 3px solid #8bff35;
}
}
 +
#nav div a:hover {
 +
background: #8bff35;
 +
color: #FFF;
 +
border-left: 2px solid #131313;
 +
border-right: 3px solid #8bff35;
 +
}
</style>
</style>
-
 
</head>
</head>
 +
<body>
<body>
-
<div class="container">
 
-
<div class="sidebar">
 
-
<h1>Modeling</h1>
+
<img src="http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/Header4.png" class="bannerImage" title="University of Calgary iGEM Team 2010"></img>
-
<ul>
+
<div class="menuBar">
-
<li><a href="https://2010.igem.org/Team:Calgary/Modeling/MATLAB">MATLAB Models</a></li>
+
<ul id="nav">
-
<li><a href="https://2010.igem.org/Team:Calgary/Modeling/Maya">Maya Animation</a></li>
+
-
<ul>
+
 +
<li>
 +
<a href="https://2010.igem.org/Team:Calgary"
 +
onmouseover="mopen('m1')"
 +
onmouseout="mclosetime()">
 +
Home</a>
 +
</li>
 +
 +
<li>
 +
<a href="https://2010.igem.org/Team:Calgary/Team"
 +
onmouseover="mopen('m2')"
 +
onmouseout="mclosetime()">
 +
Team</a>
 +
<div id="m2"
 +
onmouseover="mcancelclosetime()"
 +
onmouseout="mclosetime()">
 +
<a href="https://igem.org/Team.cgi?year=2010&team_name=Calgary">Official Team Profile</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Team/Biographies">Biographies</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Team/Facilitators">Facilitators</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Team/About_The_University">About the University</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Team/Acknowledgements">Acknowledgements</a>
 +
</div>
 +
</li>
 +
 +
<li>
 +
<a href="https://2010.igem.org/Team:Calgary/Project"
 +
onmouseover="mopen('m3')"
 +
onmouseout="mclosetime()">
 +
Project</a>
 +
<div id="m3"
 +
onmouseover="mcancelclosetime()"
 +
onmouseout="mclosetime()">
 +
<a href="https://2010.igem.org/Team:Calgary/Project">Overview</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Project/Transcription">Transcription/Translation</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Project/misfolding_overview">Protein Misfolding</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Project/Controls">Testing Our System</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Project/Achievements">Achievements</a>
 +
 +
</div>
 +
</li>
-
 
-
</div>
 
-
<div class="mainbody">
+
<li><a href="https://2010.igem.org/Team:Calgary/Parts/Parts_Submitted"
 +
onmouseover="mopen('m4')"
 +
onmouseout="mclosetime()">
 +
Parts</a>
 +
<div id="m4"
 +
onmouseover="mcancelclosetime()"
 +
onmouseout="mclosetime()">
 +
<a href="https://2010.igem.org/Team:Calgary/Parts/Parts_Submitted">Parts Submitted</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Parts/Characterization">Characterization</a>
 +
</div>
 +
</li>
-
<span id="bodytitle"><h1>Modeling</h1></span>
 
-
<p>The term “model” can refer to a number of different concepts depending on the context in which it is used. These vary from complex sets of mathematical equations to attractive, but often overally thin, people walking down runways. For our purposes though we are using the term to mean: An approach for abstracting a complex process such that aspects of the process can be explored for greater understanding.</p><br />  
+
<li><a href="https://2010.igem.org/Team:Calgary/Notebook"
-
                        <p>For our modeling project we have chosen to explore the processes of protein mis-folding and inclusion body formation. These two processes are interrelated to each other and exploring them complements nicely with the wet lab part of our project.</p><br />
+
onmouseover="mopen('m5')"
-
<p>The goals of the modeling project were to:<br />
+
onmouseout="mclosetime()">
-
<ul>
+
Notebook</a>
-
<li>Develop an understanding of the sequence of steps that occur as a proteins form inclusion bodies</li>
+
<div id="m5"
-
<li>Investigate the factors impacting the formation of misfolded proteins and inclusion bodies</li>
+
onmouseover="mcancelclosetime()"
-
<li>Attempt to quantize the affects that different factors have on the likely hood of inclusion body formation</li>
+
onmouseout="mclosetime()">
-
<li>Use the developed models to drive hypothesis to be investigated in future wet lab experiments</li>
+
<a href="https://2010.igem.org/Team:Calgary/Notebook/Calendar">Calendar</a>
-
</ul>
+
<a href="https://2010.igem.org/Team:Calgary/Notebook/Future_Directions">Future Directions</a>
-
</p><br />
+
<a href="https://2010.igem.org/Team:Calgary/Notebook/Safety_And_Protocols">Protocols</a>
-
<p>To achieve those goals two different models were developed. The first model uses MATLAB software to simulate the process of protein production. Qualitative and quantitative data about the protein production process were incorporated into this model to explore how different factors would affect the process. For the second model we have generated a visualization of the process of inclusion body formation.  
+
<a href="https://2010.igem.org/Team:Calgary/Notebook/Safety">Safety</a>
-
</p><br />
+
</div>
-
<p>More detailed information about each of the models can be found in their respective sections</p>
+
</li>
-
</div>
+
 
 +
 
 +
<li><a href="https://2010.igem.org/Team:Calgary/Modelling"
 +
onmouseover="mopen('m6')"
 +
onmouseout="mclosetime()">
 +
Modelling</a>
 +
<div id="m6"
 +
onmouseover="mcancelclosetime()"
 +
onmouseout="mclosetime()">
 +
<a href="https://2010.igem.org/Team:Calgary/Modelling/MATLAB">MATLAB</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Modelling/Maya">Animation</a>
 +
</div>
 +
</li>
 +
 
 +
 
 +
<li><a href="https://2010.igem.org/Team:Calgary/Community"
 +
onmouseover="mopen('m7')"
 +
onmouseout="mclosetime()">
 +
Community</a>
 +
<div id="m7"
 +
onmouseover="mcancelclosetime()"
 +
onmouseout="mclosetime()">
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Ethics">Ethics/Human Practices</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Gallery">Gallery</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Conferences">Conferences</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Suffield">DRDC Suffield</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Podcasts">Podcasts</a>
 +
<a href="https://2010.igem.org/Team:Calgary/Community/Blog">Visit Our Blog!</a>
 +
</div>
 +
</li>
 +
 
 +
<li><a href="https://2010.igem.org/Team:Calgary/Sponsors">Sponsors</a></li>
 +
 
 +
<li><a class="menuend" href="https://2010.igem.org/Team:Calgary/Extras">Extras</a></li>
 +
 
 +
</ul>
 +
 
</div>
</div>
-
</body>
+
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
 +
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
 +
This is a template page. READ THESE INSTRUCTIONS.
 +
</div>
 +
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
 +
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
 +
</div>
 +
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
 +
You <strong>MUST</strong> have a team description page, a project abstract, a complete project description, a lab notebook, and a safety page.  PLEASE keep all of your pages within your teams namespace. 
 +
</div>
 +
</div>
</html>
</html>
 +
 +
<!-- *** End of the alert box *** -->
 +
 +
 +
 +
{|align="justify"
 +
|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
 +
|[[Image:UT_Dallas_logo.png|200px|right|frame]]
 +
|-
 +
|
 +
''Tell us about your project.  Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
 +
|[[Image:UT_Dallas_team.png|right|frame|Your team picture]]
 +
|-
 +
|
 +
|align="center"|[[Team:UT_Dallas | Team Example]]
 +
|}
 +
 +
<!--- The Mission, Experiments --->
 +
 +
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
 +
!align="center"|[[Team:UT_Dallas|Home]]
 +
!align="center"|[[Team:UT_Dallas/Team|Team]]
 +
!align="center"|[https://igem.org/Team.cgi?year=2011&team_name=UT_Dallas Official Team Profile]
 +
!align="center"|[[Team:UT_Dallas/Project|Project]]
 +
!align="center"|[[Team:UT_Dallas/Parts|Parts Submitted to the Registry]]
 +
!align="center"|[[Team:UT_Dallas/Modeling|Modeling]]
 +
!align="center"|[[Team:UT_Dallas/Notebook|Notebook]]
 +
!align="center"|[[Team:UT_Dallas/Safety|Safety]]
 +
!align="center"|[[Team:UT_Dallas/Attributions|Attributions]]
 +
|}

Revision as of 16:02, 23 June 2011


This is a template page. READ THESE INSTRUCTIONS.
You are provided with this team page template with which to start the iGEM season. You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki. You can find some examples HERE.
You MUST have a team description page, a project abstract, a complete project description, a lab notebook, and a safety page. PLEASE keep all of your pages within your teams namespace.



You can write a background of your team here. Give us a background of your team, the members, etc. Or tell us more about something of your choosing.
File:UT Dallas logo.png
200px

Tell us about your project. Give us background. Use this as the abstract of your project. Be descriptive but concise (1-2 paragraphs)

File:UT Dallas team.png
Your team picture
Team Example


Home Team Official Team Profile Project Parts Submitted to the Registry Modeling Notebook Safety Attributions
Retrieved from "http://2011.igem.org/Team:UT_Dallas/NimiTrial"