RecA Project

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[[File:RecA strategy.jpg|500px||center|thumb|The above figure shows RecA1 as the blue band, a strand of DNA. The first round of mutations results in a plasmid that can be used in assembly. The second round of mutations results in three different mutated sites in three different plasmids. The third round of mutagenesis adds a mutated site to each of the three plasmids. A final round of mutations will result in a plasmid containing all five mutated sites, the activated RecA gene.]]
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[[File:RecA strategy.jpg|center|The above figure shows RecA1 as the blue band, a strand of DNA. The first round of mutations results in a plasmid that can be used in assembly. The second round of mutations results in three different mutated sites in three different plasmids. The third round of mutagenesis adds a mutated site to each of the three plasmids. A final round of mutations will result in a plasmid containing all five mutated sites, the activated RecA gene.]]

Revision as of 05:48, 27 September 2011

PSU iGEM 2011 Home Rec A Project Sensor Project Reporter Project

RecA Project Sensor Project Reporter Project

RecA Co-Protease

The normal laboratory strain of E. coli, DH10B, contains an inactivated form of RecA known as RecA1. Therefore, a series of mutations must occur in order to restore its proteatic function and reduce recombination.

Activation of RecA

  • Point Mutation at b.p 720: A ⇒ G

Removal of Recombinase Activity

  • Arginine 243 ⇒ Glutamine
  • Lysine 286 ⇒ Asparagine

In order to use the standard bio-bricking techniques, we also had to remove these naturally occurring enzymatic restriction sites

  • PST1 Site [CTGCAG]
    • CAG ⇒ CTG (Codon usage bias decreases: .69 to .31)
  • EcoR1 Site [GAATTC]
    • TTC ⇒ TTT (Codon usage bias increases: .49 to .51)


RecA Test Circuit: The cI repressor is constitutively produced and binds to the repressible promoter under normal settings.
RecA Test Circuit1.png

Activated RecA then cleaves the cI repressor, causing transcription of RFP. However, if RecA exhibits recombinant activity, then the homologous double terminator regions will recombine. This causes the deletion of the repressible promoter and RFP.

RecATest2.png


The above figure shows RecA1 as the blue band, a strand of DNA. The first round of mutations results in a plasmid that can be used in assembly. The second round of mutations results in three different mutated sites in three different plasmids. The third round of mutagenesis adds a mutated site to each of the three plasmids. A final round of mutations will result in a plasmid containing all five mutated sites, the activated RecA gene.
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