Team:MIT/Tools/

From 2011.igem.org

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= mcell.py - A Multicellular Modeling Framework =
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= mcell - A Multicellular Modeling Framework =
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'''''mcell.py''''' ''is a lightweight python framework for the''  '''management''' ''and'' '''analysis''' ''of flexible multicellular syn-biological models.''  
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'''''mcell''''' ''is a lightweight python framework for the''  '''management''' ''and'' '''analysis''' ''of flexible'' '''multicellular syn-biological models.''' ''mcell'' uses CompuCell3D to simulate cell dynamics using the Glazier-Graner-Hogeweg(CITE) method,  and BionetSolver to simulate the internal states of cells with ODE models. As CompuCell3D is a mature, powerful system, this gives ''mcell'' highly sophisticated cell dynamics modeling capabilities.
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'''BionetSolver''' and '''[http://compucell3d.org|CompuCell3D]'''.
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Revision as of 02:30, 27 September 2011

mcell - A Multicellular Modeling Framework

mcell is a lightweight python framework for the management and analysis of flexible multicellular syn-biological models. mcell uses CompuCell3D to simulate cell dynamics using the Glazier-Graner-Hogeweg(CITE) method, and BionetSolver to simulate the internal states of cells with ODE models. As CompuCell3D is a mature, powerful system, this gives mcell highly sophisticated cell dynamics modeling capabilities.