Team:Paris Bettencourt/Experiments/T7 diffusion

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Revision as of 13:36, 21 September 2011

Team IGEM Paris 2011

Characterization of the T7 signal amplification leakage in E. Coli

We characterized T7 autoloop in E. Coli, when hosted in the plasmid pSB1C3 (the K606036 part). The idea was to see if the system was leaky inside a synthetic biology plasmid, that is to say, a plasmid holding 4 terminators before any construct.

We found out that there is a leakage, but it is small. The cells in which the positive feed back look is activated stop deviding and glow with a very strong signal. Here are the images commented

T7 autoloop RFP+ Control / E-coli at 37°C
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	E-Coli at 37°C (rfp image)
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	-Coli at 37°C (rfp image)

The first pictures show that RFP construct has been well done. Indeed, we can see that some cells are glowing with RFP fluorescence. This also shows that the system is a bit leaky. Moreover the autoloop system is working very well because when leak occurs, cells glow highly.

T7 autoloop full no terminator / E-coli at 37°C
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	E-Coli at 37°C (rfp image)
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	-Coli at 37°C (rfp image)

This pictures show that GFP system gives more disparity than the RFP construct. This is probably due to the LB that already glows in green. It is also noticeable that B.Subtilis is naturally shining green. Moreover, the absence of double terminator could explain the leakiness of our system. However, we expected this cells to glow in RFP but they did not. This shows that the full construct has failed.

T7 autoloop full with terminator / E-coli at 37°C
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	E-Coli at 37°C (rfp image)
E-Coli at 37°C (trans image)	E-Coli at 37°C (gfp image)	-Coli at 37°C (rfp image)

The last pictures show less disparity that the precedent one. This shows that double terminator actually proceeds on the phenotype. We also can notice that the cells glow in red a bit. However we can not say if it is an artifact or if the system is actually well constructed with the terminator and RFP construct.

Go back to the model!

@@ Line 40: / Line 40: @@
 |}
-This pictures show that GFP system gives more disparity than the RFP construct. This is probably due to the LB that already glows in green. It is also noticeable that B.Subtilis is naturally shining green.
+This pictures show that GFP system gives more disparity than the RFP construct. This is probably due to the LB that already glows in green. It is also noticeable that B.Subtilis is naturally shining green. Moreover, the absence of double terminator could explain the leakiness of our system.
+However, we expected this cells to glow in RFP but they did not. This shows that the full construct has failed.
@@ Line 54: / Line 55: @@
 |[[File:T7 loop 2 rfp.jpg|290px|thumb|center|-Coli  at 37°C  (rfp image)]]
 |}
+The last pictures show less disparity that the precedent one. This shows that double terminator actually proceeds on the phenotype. We also can notice that the cells glow in red a bit. However we can not say if it is an artifact or if the system is actually well constructed with the terminator and RFP construct.
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