Team:Lyon-INSA-ENS/Project/ToGoFurtherFr

From 2011.igem.org

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              Aller plus loin <br><HR>
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        <ul style="list-style-type:circle;margin-left:10%;">           
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              <li> <a href="#story"> <font color="green"> <b> L'histoire de la Radioactivité </b> </font> </a> </li>
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              <br/>
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              <li> <a href="#living sciences"> <font color="green"> <b>Histoire des sciences de la vie </b> </font> </a> </li>
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              <br>
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              <li> <a href="#future"> <font color="green"> <b> Qu'en est-il du futur ?</b> </font> </a> </li>
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              <br/>
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              <li> <a href="#radioactivity"> <font color="green"> <b> Qu'est ce que la Radioactivité ? </b> </font> </a> </li>
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              <br/>
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              <li> <a href="#fission"> <font color="green"> <b>Neutronique de fission nucléaire pour la production d'énergie </b> </font> </a> </li>
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              <br/>
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              <li> <a href="#radiocobalt"> <font color="green"> <b>Radiocobalt</b> </font> </a> </li>
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              <br/>
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              <li> <a href="#remove"> <font color="green"> <b>Pour éliminer le cobalt… </b> </font> </a> </li>
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              <br/>
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              <li> <a href="#cobaltbuster"> <font color="green"> <b>Cobalt Buster</b> </font> </a> </li>
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              <br/>
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              <li> <a href="#biofilm"> <font color="green"> <b>Pourquoi utiliser un biofilm plutôt que les cellules libres ? </b> </font> </a> </li>
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            L'Histoire de la radioactivité<br><HR>
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<br>
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        </font>
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              L'histoire de la Radioactivité<br><HR>
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    <span style="line-height:2em;">
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<span style="line-height:1.5em;">
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Many scientific discoveries in physics, biology and computer science happened during the 19th and 20th centuries<br> <br>
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Les XIXème et XXème siècles ont été riches en découvertes scientifiques dans les domaines de la physique, du vivant et de l’informatique.<br> <br>
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The understanding of the structure of matter and in particular atom allowed the discovery and explanation of radioactivity ( observed by H. Becquerel and the Curies ). This natural or artificial property of some elements has been used in several domains like medicine and production of electric energy. The second half of the 20th century will see its industrialization.
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La compréhension de la structure de la matière et en particulier de l’atome a permis découvrir et d’expliquer le phénomène de radioactivité (observé par H. Becquerel et P&M Curie). Cette propriété naturelle et/ou artificielle de certains éléments a été utilisée dans plusieurs domaines comme la médecine et la production d’énergie électrique. La 2ème moitié du XXème siècle sera celui de son industrialisation. Voir figure 1.<br> <br>
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  <div style="text-align:center;">
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<img src="https://static.igem.org/mediawiki/2011/d/d4/Story-radioactivity.JPG"/ heigth="350px" width="700px">
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Dans les sciences du vivant, les progrès furent moins rapides. Les premières découvertes significatives datent du XVIème siècle (voir figure 2).<br> <br>
 
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Puis la microbiologie prend son essor dans la 2ème moitié du XIXème avec les travaux de L. Pasteur et d’autres scientifiques.<br> <br>
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Au XXème siècle, les découvertes concernant l’ADN (structure, régulation de l’expression des gènes, séquençage) permettront la naissance d’une nouvelle discipline : la biologie moléculaire.<br> <br>
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Puis les travaux sur les enzymes de restriction et sur la Polymerase Chain reaction (PCR) permettent aujourd’hui de « construire » de nouvelles molécules d’ADN.<br> <br>
 
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Ce sont les progrès en informatique, la puissance accrue des ordinateurs, les logiciels de modélisation, d’alignement de séquences…qui viennent ouvrir la voie à la biologie de synthèse.<br> <br>
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      <p id= "living sciences"> <font color="green" size="5">
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              Story of living sciences<br><HR>
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Toute phase d’industrialisation a un impact social, économique, généralement favorable, mais aussi un impact environnemental malheureusement souvent négatif.<br> <br>
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<span style="line-height:1.5em;">
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In living sciences, progress was slower. The first significant discoveries date from the 16th century.<br> <br>
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Le nucléaire a permis d’énormes progrès mais les conséquences sont nombreuses : utilisation comme arme, accidents nucléaires (Tchernobyl (1986), Fukushima (2011)…) et les déchets et les risques de pollution associés.<br> <br>
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Then, microbiology rose during the second half of the 19th century with L. Pasteur and other scientists' work.
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Nous devons nous poser les mêmes questions concernant la biologie de synthèse mais nous pouvons peut-être aller plus loin : en tirant des leçons du passé, limitons notre impact en respectant des règles de « bonne utilisation » mais aussi proposons des solutions innovantes pour répondre aux problèmes générés au cours du siècle précédent.<br> <br>
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During the 20th century, discoveries about DNA ( structure, regulation of gene expression, sequencing) allowed the birth of a new domain : molecular biology.<br>  
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Après l’époque des grandes découvertes (fin XIXème) en physique nucléaire, après la phase d’industrialisation (XXème), le XXIème siècle sera, nous l’espérons, le siècle des solutions grâce à la biologie de synthèse, l’iGEM et pourquoi pas notre projet CobaltBuster. <br> <br>  
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Then, works on restriction enzymes and Polymerase Chain Reaction (PCR) allow the building of new DNA molecules.<br>
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Progress in computer science, increased computing power, new modeling and sequence alignment softwares has now paved the way for synthetic biology. <br> <br>
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        What about the future ?  <br><HR>
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Any industrialization phase has a generally favorable social and economic impact, but also an environmental impact, unfortunately often negative.<br> <br>
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Nuclear technology allowed huge progress but at the cost of several consequences : use as weapon, nuclear accidents (Tchernobyl (1986), Fukushima (2011)…) and nuclear waste, with the associated risks of pollution.<br> <br>
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We have to consider those same questions with synthetic biology, but we can also go further : by learning from the past, limit our impact by respecting some "good practice" rules, and propose innovative solutions to the problems aroused during the previous century.<br> <br>
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After the great discoveries in nuclear physics ( end of 19th c), after the industrialiation phase (20th c),we hope the 21st century will be a century of solutions thanks to synthetic biology, iGEM and, maybe, our Cobalt Buster project. <br> <br>  
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              What is Radioactivity ?<br><HR>
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<span style="line-height:1.5em;">
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Some atomic <b>nucleus</b> of an <b>unstable</b> atom lose energy by emitting ionizing particles (&alpha;, &beta;+ or &beta;-).
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The emission is <b>spontaneous</b>. This is <b>natural radioactivity</b>.
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<span style="line-height:1.5em">
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Researchers have used &alpha; <b>particle to react</b> with another atom such as Beryllium. The result is a Carbon nucleus and <b>a neutron</b>. This is <b>artificial radioactivity</b> or induced radioactivity.
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<span style="line-height:1.5em">
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Researchers then used <b>neutrons to react with atoms </b> (for example <SUP>235</SUP> Uranium). The result is a bigger nucleus with an exces of neutron leading to an increase of the <b>unstability</b> and the new nucleus can <b>split</b> into 2 smaller nuclei. This phenomenon is the <b>neutronic fission</b>.
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            Neutronic nuclear fission for energy production<br><HR>
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<span style="line-height: 1.5em">
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<b>Nuclear Power Plants</b> use neutronic fission to produce energy. In France, reactors are <I> pressurized water reactors (PWR)</I>. 235 U, the most desirable isotope of uranium absorbs neutron and then split into 2 smaller nuclei and <b>release a lot of energy</b> + new neutrons able to react with other 235U (nuclear chain reaction).
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<span style="line-height: 1.5em">
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A nuclear reactor coolant (water in PWR) is circulated past the reactor core to absorb the heat that it generates.
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The reactor, pipes and steam generator are in <b>steel</b> that contains Carbon, Iron but also Nickel and <b>Cobalt</b>. These atoms (C, Fe, Ni, Co…) are submitted to neutronic activation leading to <b>activation products</b>.
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          Qu'est ce qu'une centrale nucléaire ?<br><HR>
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            Radiocobalt<br><HR>
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<span style="line-height: 1.5em">
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59Co is a stable isotope. It can absorb a neutron and become 60Co. This isotope is unstable (half life : 5.272 years).
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Its disintegration leads to the emission of &beta; particle and &gamma; radiations.
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These electromagnetic radiations pass through the matter very easily. To attenuate these rays, lead/concrete shields are necessary. Protective clothing and respirators can protect from internal contact with or ingestion of &alpha; or &beta; particles, but provide no protection from &gamma; radiation. To allow human intervention in the Nuclear Power Plant for maintenance, control…, water is filtered continually to remove radioactive atoms.
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      <p id = "remove" > <font color="green" size="5">
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            To remove cobalt… <br><HR>
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<span style="line-height: 1.5em">
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At present, all waters on nuclear sites (Nuclear Power Plant of course but also all the other industries related to
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nuclear (nuclear fuel production, radioactive waste treatment…) are filtered on Ion-exchange resins.
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<br/> <br/>
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The resins are effective but not selective and after use, the resins are a voluminous waste (no possibility of
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incineration or other treatment). Nowadays, the main challenge in nuclear waste management is the reduction of
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the quantity (volume).
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      <p id = "cobaltbuster" > <font color="green" size="5">
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      <br>
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            Cobalt Buster<br><HR>
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<span style="line-height: 1.5em">
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Cobaltbuster is a biofiltre using modified bacteria able to adsorb more cobalt than wild strain and with the ability
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to stick on surfaces in the presence of Cobalt.
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</span>
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  <ul style="list-style-type:circle;margin-left:10%;">           
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              <li style="line-height: 1.5em"> the pollution is concentrated on the bacterial biofilm (volume reduction) </li>
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              <li style="line-height: 1.5em"> the pollution could be screened, using different modified bacteria (for Co, for Ni …) and radioactive element could be separated depending the type of radiations. It could be interesting to separate &alpha;-generating or &gamma;-rays generating atoms from the others to better answer ANDRA specifications (ANDRA is the agency in charge of nuclear waste storage in France) </li>
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              <li style="line-height: 1.5em"> the biofilm, removed after use, could also be incinerated (volume reduction). </li>
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              <li style="line-height: 1.5em"> Bacteria cultures are less expensive than ion-exchange resins </li>
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      <p id = "biofilm" > <font color="green" size="5">
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            Why using a biofilm rather than free cells ? <br><HR>
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<span style="line-height: 1.5em">
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<h3>But what is a BIOFILM ?? </h3>
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Antonie van Leeuwenhoek (XVII century) was the first to observe animacules (as he named them) present in his
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own dental plaque. These animacules are micro-organisms but more precisely a
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biofilm of micro-organisms .
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This discovery was outshine by other important researches. Louis Pasteur (XIX century) was the first to realize a
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pure culture in liquid medium. This culture method became the reference method for all microbiologists and help
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them to understand physiologic and genetic mechanisms.
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<br/> <br/>
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A biofilm is a consortium of different species/genus of micro-organisms (bacteria, algae…) fixed onto a surface.
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<br/> <br/>
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W. J Costerton described in the 80’s the biofilm as a microbial community developing specific structures (proteins,
 +
polysaccharides…) to stick on surfaces or on other micro-organisms. Nowadays, biofilm concept is accepted by a
 +
large community of scientists which considers that most of micro-organisms live in biofilm in the environment.
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<h3>Biofilm vs free-cell</h3>
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Biofilm can be considered as a cell organization more resistant to environmental “stress” (nutrient depletion,
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pollutants…). <br/>
 +
In case of pollutants, the extra-cellular matrix, synthesized by the biofilm, can play the role of a pollution-trap by
 +
adsorption. By this way, taking into account that pollutant are less bio-available ( i.e less toxic), cells can live in presence of higher concentrations. And if bacteria have new functions (Co accumulation for example) given by
 +
genetic manipulations, the biofilm is more effective.
 +
<br/> <br/>
 +
The dissemination of modified micro-organisms into the environment is not expected especially if their function is
 +
removing pollution. If the modified micro-organism is in a biofilm, pollution and modified micro-organisms are
 +
confined. And in the case of radioactive substances, it is essential.
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Revision as of 00:01, 21 September 2011












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L'histoire de la Radioactivité




Many scientific discoveries in physics, biology and computer science happened during the 19th and 20th centuries

The understanding of the structure of matter and in particular atom allowed the discovery and explanation of radioactivity ( observed by H. Becquerel and the Curies ). This natural or artificial property of some elements has been used in several domains like medicine and production of electric energy. The second half of the 20th century will see its industrialization.






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Story of living sciences




In living sciences, progress was slower. The first significant discoveries date from the 16th century.

Then, microbiology rose during the second half of the 19th century with L. Pasteur and other scientists' work. During the 20th century, discoveries about DNA ( structure, regulation of gene expression, sequencing) allowed the birth of a new domain : molecular biology.
Then, works on restriction enzymes and Polymerase Chain Reaction (PCR) allow the building of new DNA molecules.
Progress in computer science, increased computing power, new modeling and sequence alignment softwares has now paved the way for synthetic biology.






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What about the future ?




Any industrialization phase has a generally favorable social and economic impact, but also an environmental impact, unfortunately often negative.

Nuclear technology allowed huge progress but at the cost of several consequences : use as weapon, nuclear accidents (Tchernobyl (1986), Fukushima (2011)…) and nuclear waste, with the associated risks of pollution.

We have to consider those same questions with synthetic biology, but we can also go further : by learning from the past, limit our impact by respecting some "good practice" rules, and propose innovative solutions to the problems aroused during the previous century.

After the great discoveries in nuclear physics ( end of 19th c), after the industrialiation phase (20th c),we hope the 21st century will be a century of solutions thanks to synthetic biology, iGEM and, maybe, our Cobalt Buster project.





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What is Radioactivity ?




Some atomic nucleus of an unstable atom lose energy by emitting ionizing particles (α, β+ or β-). The emission is spontaneous. This is natural radioactivity.
Researchers have used α particle to react with another atom such as Beryllium. The result is a Carbon nucleus and a neutron. This is artificial radioactivity or induced radioactivity.
Researchers then used neutrons to react with atoms (for example 235 Uranium). The result is a bigger nucleus with an exces of neutron leading to an increase of the unstability and the new nucleus can split into 2 smaller nuclei. This phenomenon is the neutronic fission.



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Neutronic nuclear fission for energy production




Nuclear Power Plants use neutronic fission to produce energy. In France, reactors are pressurized water reactors (PWR). 235 U, the most desirable isotope of uranium absorbs neutron and then split into 2 smaller nuclei and release a lot of energy + new neutrons able to react with other 235U (nuclear chain reaction).
A nuclear reactor coolant (water in PWR) is circulated past the reactor core to absorb the heat that it generates. The reactor, pipes and steam generator are in steel that contains Carbon, Iron but also Nickel and Cobalt. These atoms (C, Fe, Ni, Co…) are submitted to neutronic activation leading to activation products.


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Radiocobalt




59Co is a stable isotope. It can absorb a neutron and become 60Co. This isotope is unstable (half life : 5.272 years). Its disintegration leads to the emission of β particle and γ radiations.

These electromagnetic radiations pass through the matter very easily. To attenuate these rays, lead/concrete shields are necessary. Protective clothing and respirators can protect from internal contact with or ingestion of α or β particles, but provide no protection from γ radiation. To allow human intervention in the Nuclear Power Plant for maintenance, control…, water is filtered continually to remove radioactive atoms.




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To remove cobalt…




At present, all waters on nuclear sites (Nuclear Power Plant of course but also all the other industries related to nuclear (nuclear fuel production, radioactive waste treatment…) are filtered on Ion-exchange resins.

The resins are effective but not selective and after use, the resins are a voluminous waste (no possibility of incineration or other treatment). Nowadays, the main challenge in nuclear waste management is the reduction of the quantity (volume).



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Cobalt Buster




Cobaltbuster is a biofiltre using modified bacteria able to adsorb more cobalt than wild strain and with the ability to stick on surfaces in the presence of Cobalt.
  • the pollution is concentrated on the bacterial biofilm (volume reduction)

  • the pollution could be screened, using different modified bacteria (for Co, for Ni …) and radioactive element could be separated depending the type of radiations. It could be interesting to separate α-generating or γ-rays generating atoms from the others to better answer ANDRA specifications (ANDRA is the agency in charge of nuclear waste storage in France)

  • the biofilm, removed after use, could also be incinerated (volume reduction).

  • Bacteria cultures are less expensive than ion-exchange resins




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Why using a biofilm rather than free cells ?




But what is a BIOFILM ??


Antonie van Leeuwenhoek (XVII century) was the first to observe animacules (as he named them) present in his own dental plaque. These animacules are micro-organisms but more precisely a biofilm of micro-organisms . This discovery was outshine by other important researches. Louis Pasteur (XIX century) was the first to realize a pure culture in liquid medium. This culture method became the reference method for all microbiologists and help them to understand physiologic and genetic mechanisms.

A biofilm is a consortium of different species/genus of micro-organisms (bacteria, algae…) fixed onto a surface.

W. J Costerton described in the 80’s the biofilm as a microbial community developing specific structures (proteins, polysaccharides…) to stick on surfaces or on other micro-organisms. Nowadays, biofilm concept is accepted by a large community of scientists which considers that most of micro-organisms live in biofilm in the environment.



Biofilm vs free-cell


Biofilm can be considered as a cell organization more resistant to environmental “stress” (nutrient depletion, pollutants…).
In case of pollutants, the extra-cellular matrix, synthesized by the biofilm, can play the role of a pollution-trap by adsorption. By this way, taking into account that pollutant are less bio-available ( i.e less toxic), cells can live in presence of higher concentrations. And if bacteria have new functions (Co accumulation for example) given by genetic manipulations, the biofilm is more effective.

The dissemination of modified micro-organisms into the environment is not expected especially if their function is removing pollution. If the modified micro-organism is in a biofilm, pollution and modified micro-organisms are confined. And in the case of radioactive substances, it is essential.



Back to the top




ENS assystem Biomérieux INSA INSA