Team:Arizona State/Templates/cas table
From 2011.igem.org
(Difference between revisions)
Ethan ward (Talk | contribs) |
Ethan ward (Talk | contribs) |
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| || cas_HTH || || || || || || || || || || || || || || || || || || || || | | || cas_HTH || || || || || || || || || || || || || || || || || || || || | ||
|- | |- | ||
- | |cas1 || cas1 || cas1 || y || y || y || y || y || y || y || y || y || y || || || || {{:Team:Arizona State/Templates/cog|1518}} || 00287 || || || Nuclease {{:Team:Arizona State/Templates/ref|72}} || | + | |cas1 || cas1 || cas1 || y || y || y || y || y || y || y || y || y || y || || || || {{:Team:Arizona State/Templates/cog|1518}} || {{:Team:Arizona State/Templates/tigr|00287}} || || || Nuclease {{:Team:Arizona State/Templates/ref|72}} || |
|- | |- | ||
- | |cas10 || cmr2 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || 02577 || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || | + | |cas10 || cmr2 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02577}} || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || |
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- | |cas10 || csm1 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || 02578 || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || | + | |cas10 || csm1 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02578}} || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || |
|- | |- | ||
|cas10 || csx11 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || | |cas10 || csx11 || || || || || || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1353}} || || || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} || | ||
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|cas10d || csc3 || || || || || y || || || || || || || || || || {{:Team:Arizona State/Templates/cog|1353}} || || || y || || | |cas10d || csc3 || || || || || y || || || || || || || || || || {{:Team:Arizona State/Templates/cog|1353}} || || || y || || | ||
|- | |- | ||
- | |cas2 || cas2 || cas2 || y || y || y || y || y || y || y || y || y || y || || || || {{:Team:Arizona State/Templates/cog|1343}}, {{:Team:Arizona State/Templates/cog|3512}} || 01573 || || || || | + | |cas2 || cas2 || cas2 || y || y || y || y || y || y || y || y || y || y || || || || {{:Team:Arizona State/Templates/cog|1343}}, {{:Team:Arizona State/Templates/cog|3512}} || {{:Team:Arizona State/Templates/tigr|01573}} || || || || |
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- | |cas3' || cas3 || cas3 || y || y || y || y || y || y || || || || || || || || {{:Team:Arizona State/Templates/cog|1203}} || 01587 || || || Helicase, nuclease {{:Team:Arizona State/Templates/ref|13}} || | + | |cas3' || cas3 || cas3 || y || y || y || y || y || y || || || || || || || || {{:Team:Arizona State/Templates/cog|1203}} || {{:Team:Arizona State/Templates/tigr|01587}} || || || Helicase, nuclease {{:Team:Arizona State/Templates/ref|13}} || |
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|cas3'' || || || y || y || || || || || || || || || || || || {{:Team:Arizona State/Templates/cog|2254}} || || || || || | |cas3'' || || || y || y || || || || || || || || || || || || {{:Team:Arizona State/Templates/cog|2254}} || || || || || | ||
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- | |cas4 || cas4 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/cog|1468}} || 00372 || || || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} || | + | |cas4 || cas4 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|00372}} || || || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} || |
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- | |cas4 || csa1 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/cog|1468}} || 01896 || || || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} || | + | |cas4 || csa1 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|01896}} || || || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} || |
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- | |cas5 || cas5d || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || 01876 || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | + | |cas5 || cas5d || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01876}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
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- | |cas5 || cas5e || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || 01868 || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | + | |cas5 || cas5e || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01868}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
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- | |cas5 || cas5h || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || 02592 || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | + | |cas5 || cas5h || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|02592}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
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- | |cas5 || cas5t || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || 01895 || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | + | |cas5 || cas5t || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01895}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
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|cas5 || cmx5 || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | |cas5 || cmx5 || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | ||
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- | |cas5 || csa5a || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || 01874 || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | + | |cas5 || csa5a || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01874}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
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|cas5 || csa5p || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | |cas5 || csa5p || casD || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1688}} || || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 | ||
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- | |cas6 || cas6 || || y || y || || y || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || 01877 || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | + | |cas6 || cas6 || || y || y || || y || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || {{:Team:Arizona State/Templates/tigr|01877}} || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 |
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|cas6 || cmx6 || || y || y || || y || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | |cas6 || cmx6 || || y || y || || y || || || || || y || y || || || || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | ||
|- | |- | ||
- | |cas6e || cse3 || casE || || || || || y || || || || || || || || || || 01907 || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | + | |cas6e || cse3 || casE || || || || || y || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01907}} || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 |
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- | |cas6f || csy4 || || || || || || || y || || || || || || || || || 02563 || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | + | |cas6f || csy4 || || || || || || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02563}} || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 |
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- | |cas7 || csa2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || 02583 || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | + | |cas7 || csa2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02583}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 |
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- | |cas7 || csd2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || 02589 || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | + | |cas7 || csd2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02589}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 |
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- | |cas7 || cse4 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || 01869 || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | + | |cas7 || cse4 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|01869}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 |
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- | |cas7 || csh2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || 02590 || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | + | |cas7 || csh2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02590}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 |
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|cas7 || csp1 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | |cas7 || csp1 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | ||
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- | |cas7 || cst2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || 02585 || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 | + | |cas7 || cst2 || casC || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02585}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7 |
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|cas8a1 || CXXC-CXXC || || y || || || || || || || || || || || || || || || || y || || | |cas8a1 || CXXC-CXXC || || y || || || || || || || || || || || || || || || || y || || | ||
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|cas8a1 || cmx1 || || y || || || || || || || || || || || || || || || || y || || | |cas8a1 || cmx1 || || y || || || || || || || || || || || || || || || || y || || | ||
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- | |cas8a1 || cst1 || || y || || || || || || || || || || || || || || 01908 || || y || || | + | |cas8a1 || cst1 || || y || || || || || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01908}} || || y || || |
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|cas8a1 || csx13 || || y || || || || || || || || || || || || || || || || y || || | |cas8a1 || csx13 || || y || || || || || || || || || || || || || || || || y || || | ||
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|cas8a1 || csx8 || || y || || || || || || || || || || || || || || || || y || || | |cas8a1 || csx8 || || y || || || || || || || || || || || || || || || || y || || | ||
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- | |cas8a2 || csa4 || || y || || || || || || || || || || || || || || 01914 || || y || || | + | |cas8a2 || csa4 || || y || || || || || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01914}} || || y || || |
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|cas8a2 || csx9 || || y || || || || || || || || || || || || || || || || y || || | |cas8a2 || csx9 || || y || || || || || || || || || || || || || || || || y || || | ||
Line 95: | Line 95: | ||
|cas8b || TM1802 || || || y || || || || || || || || || || || || || || || y || || | |cas8b || TM1802 || || || y || || || || || || || || || || || || || || || y || || | ||
|- | |- | ||
- | |cas8b || csh1 || || || y || || || || || || || || || || || || || 02591 || || y || || | + | |cas8b || csh1 || || || y || || || || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02591}} || || y || || |
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- | |cas8c || csd1 || || || || y || || || || || || || || || || || || 01863 || || y || || | + | |cas8c || csd1 || || || || y || || || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01863}} || || y || || |
|- | |- | ||
|cas8c || csp2 || || || || y || || || || || || || || || || || || || || y || || | |cas8c || csp2 || || || || y || || || || || || || || || || || || || || y || || | ||
|- | |- | ||
- | |cas9 || csn1 || || || || || || || || y || y || || || || || || {{:Team:Arizona State/Templates/cog|3513}} || 01865 || || || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} || | + | |cas9 || csn1 || || || || || || || || y || y || || || || || || {{:Team:Arizona State/Templates/cog|3513}} || {{:Team:Arizona State/Templates/tigr|01865}} || || || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} || |
|- | |- | ||
|cas9 || csx12 || || || || || || || || y || y || || || || || || {{:Team:Arizona State/Templates/cog|3513}} || || || || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} || | |cas9 || csx12 || || || || || || || || y || y || || || || || || {{:Team:Arizona State/Templates/cog|3513}} || || || || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} || | ||
|- | |- | ||
- | |cmr1 || cmr1 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1367}} || 01894 || y || y || || cas7 | + | |cmr1 || cmr1 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1367}} || {{:Team:Arizona State/Templates/tigr|01894}} || y || y || || cas7 |
|- | |- | ||
- | |cmr3 || cmr3 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1769}} || 01888 || y || y || || cas5 | + | |cmr3 || cmr3 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1769}} || {{:Team:Arizona State/Templates/tigr|01888}} || y || y || || cas5 |
|- | |- | ||
- | |cmr4 || cmr4 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1336}} || 02580 || y || y || || cas7 | + | |cmr4 || cmr4 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1336}} || {{:Team:Arizona State/Templates/tigr|02580}} || y || y || || cas7 |
|- | |- | ||
- | |cmr5 || cmr5 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|3337}} || 01881 || || y || || | + | |cmr5 || cmr5 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|3337}} || {{:Team:Arizona State/Templates/tigr|01881}} || || y || || |
|- | |- | ||
- | |cmr6 || cmr6 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1604}} || 01898 || y || y || || cas7 | + | |cmr6 || cmr6 || || || || || || || || || || || y || || || || {{:Team:Arizona State/Templates/cog|1604}} || {{:Team:Arizona State/Templates/tigr|01898}} || y || y || || cas7 |
|- | |- | ||
- | |csa5 || csa5 || || y || || || || || || || || || || || || || || 01878 || || y || || | + | |csa5 || csa5 || || y || || || || || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01878}} || || y || || |
|- | |- | ||
- | |csaX || csaX || || || || || || || || || || || || || y || || || 03876 || || || || | + | |csaX || csaX || || || || || || || || || || || || || y || || || {{:Team:Arizona State/Templates/tigr|03876}} || || || || |
|- | |- | ||
|csb1 || GSU0053 || || || || || || || || || || || || y || || || || || y || || || | |csb1 || GSU0053 || || || || || || || || || || || || y || || || || || y || || || | ||
Line 129: | Line 129: | ||
|csc2 || csc2 || || || || || || || || || || || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | |csc2 || csc2 || || || || || || || || || || || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | ||
|- | |- | ||
- | |cse1 || cse1 || casA || || || || || y || || || || || || || || || || 02547 || || y || || | + | |cse1 || cse1 || casA || || || || || y || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02547}} || || y || || |
|- | |- | ||
- | |cse2 || cse2 || casB || || || || || y || || || || || || || || || || 02548 || || y || || | + | |cse2 || cse2 || casB || || || || || y || || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02548}} || || y || || |
|- | |- | ||
|csf1 || csf1 || || || || || || || || || || || || || || y || || || || || || | |csf1 || csf1 || || || || || || || || || || || || || || y || || || || || || | ||
Line 141: | Line 141: | ||
|csf4 || csf4 || || || || || || || || || || || || || || y || || || || || || | |csf4 || csf4 || || || || || || || || || || || || || || y || || || || || || | ||
|- | |- | ||
- | |csm2 || csm2 || || || || || || || || || || y || || || || || || 01870 || || y || || | + | |csm2 || csm2 || || || || || || || || || || y || || || || || || {{:Team:Arizona State/Templates/tigr|01870}} || || y || || |
|- | |- | ||
|csm3 || csc2 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | |csm3 || csc2 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | ||
Line 147: | Line 147: | ||
|csm3 || csm3 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | |csm3 || csm3 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1337}} || || y || y || || cas7 | ||
|- | |- | ||
- | |csm4 || csm4 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1567}} || 01903 || y || y || || cas5 | + | |csm4 || csm4 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1567}} || {{:Team:Arizona State/Templates/tigr|01903}} || y || y || || cas5 |
|- | |- | ||
- | |csm5 || csm5 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1332}} || 01899 || y || y || || cas7 | + | |csm5 || csm5 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1332}} || {{:Team:Arizona State/Templates/tigr|01899}} || y || y || || cas7 |
|- | |- | ||
|csm6 || APE2256 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1517}} || || || || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} || | |csm6 || APE2256 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1517}} || || || || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} || | ||
|- | |- | ||
- | |csm6 || csm6 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1517}} || 02672 || || || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} || | + | |csm6 || csm6 || || || || || || || || || || y || || || || || {{:Team:Arizona State/Templates/cog|1517}} || {{:Team:Arizona State/Templates/tigr|02672}} || || || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} || |
|- | |- | ||
- | |csn2 || csn2 || || || || || || || || y || || || || || || || || 01866 || || || || | + | |csn2 || csn2 || || || || || || || || y || || || || || || || || {{:Team:Arizona State/Templates/tigr|01866}} || || || || |
|- | |- | ||
|csx1 || DXTHG || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | |csx1 || DXTHG || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | ||
Line 163: | Line 163: | ||
|csx1 || TIGR02710 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | |csx1 || TIGR02710 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | ||
|- | |- | ||
- | |csx1 || csa3 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || 01884 || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | + | |csx1 || csa3 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || {{:Team:Arizona State/Templates/tigr|01884}} || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || |
|- | |- | ||
|csx1 || csx1 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | |csx1 || csx1 || || || || || || || || || || || || || y || || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || || || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} || | ||
Line 181: | Line 181: | ||
|csx3 || csx3 || || || || || || || || || || || || || y || || || || || || || | |csx3 || csx3 || || || || || || || || || || || || || y || || || || || || || | ||
|- | |- | ||
- | |csy1 || csy1 || || || || || || || y || || || || || || || || || 02564 || || y || || | + | |csy1 || csy1 || || || || || || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02564}} || || y || || |
|- | |- | ||
- | |csy2 || csy2 || || || || || || || y || || || || || || || || || 02565 || y || y || || cas5 | + | |csy2 || csy2 || || || || || || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02565}} || y || y || || cas5 |
|- | |- | ||
- | |csy3 || csy3 || || || || || || || y || || || || || || || || || 02566 || || y || || cas7 | + | |csy3 || csy3 || || || || || || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|02566}} || || y || || cas7 |
|- | |- | ||
|} | |} |
Revision as of 20:22, 10 August 2011
Name [62] | Name [13] | Name[23] | I-A | I-B | I-C | I-D | I-E | I-F | II-A | II-B | III-A | III-B | I-U | III-U | U | COG | TIGR | Ramp [62] | cascade-like complex [62] | putative function | grouping [71] |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
cas_HTH | |||||||||||||||||||||
cas1 | cas1 | cas1 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1518 1518] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00287 00287] | Nuclease [72] | ||||||
cas10 | cmr2 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02577 02577] | y | Polymerase [72] | ||||||||||||||
cas10 | csm1 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02578 02578] | y | Polymerase [72] | ||||||||||||||
cas10 | csx11 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | Polymerase [72] | |||||||||||||||
cas10d | csc3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | |||||||||||||||||
cas2 | cas2 | cas2 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1343 1343], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3512 3512] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01573 01573] | |||||||
cas3' | cas3 | cas3 | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1203 1203] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01587 01587] | Helicase, nuclease [13] | ||||||||||
cas3 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2254 2254] | ||||||||||||||||||
cas4 | cas4 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00372 00372] | RecB exonuclease [72][73] | ||||||||||||
cas4 | csa1 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01896 01896] | RecB exonuclease [72][73] | ||||||||||||
cas5 | cas5d | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01876 01876] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
cas5 | cas5e | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01868 01868] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
cas5 | cas5h | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02592 02592] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
cas5 | cas5t | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01895 01895] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
cas5 | cmx5 | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
cas5 | csa5a | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01874 01874] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
cas5 | csa5p | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
cas6 | cas6 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01877 01877] | y | crRNA processing [62] | cas6 | ||||||||||
cas6 | cmx6 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] | y | crRNA processing [62] | cas6 | |||||||||||
cas6e | cse3 | casE | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01907 01907] | y | crRNA processing [62] | cas6 | ||||||||||||||
cas6f | csy4 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02563 02563] | y | crRNA processing [62] | cas6 | |||||||||||||||
cas7 | csa2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02583 02583] | y | y | Regulation [13] | cas7 | |||||||||
cas7 | csd2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02589 02589] | y | y | Regulation [13] | cas7 | |||||||||
cas7 | cse4 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01869 01869] | y | y | Regulation [13] | cas7 | |||||||||
cas7 | csh2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02590 02590] | y | y | Regulation [13] | cas7 | |||||||||
cas7 | csp1 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
cas7 | cst2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02585 02585] | y | y | Regulation [13] | cas7 | |||||||||
cas8a1 | CXXC-CXXC | y | y | ||||||||||||||||||
cas8a1 | cmx1 | y | y | ||||||||||||||||||
cas8a1 | cst1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01908 01908] | y | |||||||||||||||||
cas8a1 | csx13 | y | y | ||||||||||||||||||
cas8a1 | csx8 | y | y | ||||||||||||||||||
cas8a2 | csa4 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01914 01914] | y | |||||||||||||||||
cas8a2 | csx9 | y | y | ||||||||||||||||||
cas8b | TM1802 | y | y | ||||||||||||||||||
cas8b | csh1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02591 02591] | y | |||||||||||||||||
cas8c | csd1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01863 01863] | y | |||||||||||||||||
cas8c | csp2 | y | y | ||||||||||||||||||
cas9 | csn1 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01865 01865] | HNH endonuclease [13] | |||||||||||||||
cas9 | csx12 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] | HNH endonuclease [13] | ||||||||||||||||
cmr1 | cmr1 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1367 1367] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01894 01894] | y | y | cas7 | ||||||||||||||
cmr3 | cmr3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1769 1769] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01888 01888] | y | y | cas5 | ||||||||||||||
cmr4 | cmr4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1336 1336] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02580 02580] | y | y | cas7 | ||||||||||||||
cmr5 | cmr5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3337 3337] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01881 01881] | y | ||||||||||||||||
cmr6 | cmr6 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1604 1604] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01898 01898] | y | y | cas7 | ||||||||||||||
csa5 | csa5 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01878 01878] | y | |||||||||||||||||
csaX | csaX | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR03876 03876] | ||||||||||||||||||
csb1 | GSU0053 | y | y | ||||||||||||||||||
csb2 | y | y | |||||||||||||||||||
csb3 | y | y | |||||||||||||||||||
csc1 | csc1 | y | y | cas5 | |||||||||||||||||
csc2 | csc2 | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | ||||||||||||||||
cse1 | cse1 | casA | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02547 02547] | y | ||||||||||||||||
cse2 | cse2 | casB | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02548 02548] | y | ||||||||||||||||
csf1 | csf1 | y | |||||||||||||||||||
csf2 | csf2 | y | y | cas7 | |||||||||||||||||
csf3 | csf3 | y | y | ||||||||||||||||||
csf4 | csf4 | y | |||||||||||||||||||
csm2 | csm2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01870 01870] | y | |||||||||||||||||
csm3 | csc2 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | |||||||||||||||
csm3 | csm3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | |||||||||||||||
csm4 | csm4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1567 1567] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01903 01903] | y | y | cas5 | ||||||||||||||
csm5 | csm5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1332 1332] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01899 01899] | y | y | cas7 | ||||||||||||||
csm6 | APE2256 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] | transctiption regulation [62] | |||||||||||||||||
csm6 | csm6 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02672 02672] | transctiption regulation [62] | ||||||||||||||||
csn2 | csn2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01866 01866] | ||||||||||||||||||
csx1 | DXTHG | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
csx1 | NE0113 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
csx1 | TIGR02710 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
csx1 | csa3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01884 01884] | Helix-turn-helix, transcription regulation [13] | ||||||||||||||||
csx1 | csx1 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
csx1 | csx2 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
csx10 | csx10 | y | y | ||||||||||||||||||
csx14 | y | ||||||||||||||||||||
csx15 | |||||||||||||||||||||
csx16 | VVA1548 | y | |||||||||||||||||||
csx17 | y | ||||||||||||||||||||
csx3 | csx3 | y | |||||||||||||||||||
csy1 | csy1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02564 02564] | y | |||||||||||||||||
csy2 | csy2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02565 02565] | y | y | cas5 | |||||||||||||||
csy3 | csy3 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02566 02566] | y | cas7 |