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Team:Yale/Notebook/Week10
From 2011.igem.org
(Created page with "== Notebook: Week 5 == ''Friday'' - Planned/mapped out next 4 weeks - Took dialyzed bag with purified eGFP-RiAFP and divided it into 12 eppendorfs, containing 1 mL each. Flash-...") |
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- Ligated gel-extracted pSB1AK8 fragments with pSB1C3; ligated eGFP PCR fragment with BBa_I712074 | - Ligated gel-extracted pSB1AK8 fragments with pSB1C3; ligated eGFP PCR fragment with BBa_I712074 | ||
- Transformed ligations into DH5alpha cells, plated them | - Transformed ligations into DH5alpha cells, plated them | ||
| + | |||
| + | ''Monday'' | ||
| + | - Ran colony PCR on transformed samples; seems to confirm successful ligation (see pics below): | ||
| + | - Picked up lyophilized cells; resuspended first in 50 mL of 50 mM Tris-HCl (pH 7.5); A280 ~ .72, A488 ~ .13; however, looked cloudy (possible aggregation?), so centrifuged at 13K rpm for 10 minutes, and UV-vised the supernatant, A280 ~ .23, A488 ~ .04, suggesting around 75% was aggregated. Tried again to resuspend in 100 mL Tris-HCl and adding 50 mM NaCl; still no good; tried adding acid and killed protein activity | ||
| + | |||
| + | ''Tuesday'' | ||
| + | - Miniprepped successful colony PCRs and submitted samples for sequencing | ||
| + | - Prepared more buffers for protein purification | ||
| + | - Transformed eGFP and eGFP-RiAFP and RiAFP cells | ||
| + | |||
| + | ''Wednesday'' | ||
| + | - Protein purification round 2! | ||
| + | - Innoculated eGFP, eGFP-RiAFP, and RiAFP cells | ||
Revision as of 00:03, 4 August 2011
Notebook: Week 5
Friday - Planned/mapped out next 4 weeks - Took dialyzed bag with purified eGFP-RiAFP and divided it into 12 eppendorfs, containing 1 mL each. Flash-froze tubes in liquid nitrogen, then quickly used a hot edge to poke holes into top of eppendorfs to allow sublimation. Tubes then placed in lyophilizer for 3 nights.
Saturday - Began cloning all pSB1AK8 constructs into pSB1C3 for parts submission (G3, H1, RiA, RiG, T2, Z2?): - Digested 6 constructs and linearized pSB1C3 with EcoRI, PstI - Also, PCR amplified eGFP segment from original eGFP-RiAFP plasmid to use as a control for survival assays - Digested PCR fragment with eGFP with XbaI, PstI, and digested BBa_I712074 (strong T7 promoter) with SpeI and PstI - Gel extracted all digested pSB1AK8 constructs using kit, gel visualized with SYBRSafe (digestion seemed successful)
Sunday - Ligated gel-extracted pSB1AK8 fragments with pSB1C3; ligated eGFP PCR fragment with BBa_I712074 - Transformed ligations into DH5alpha cells, plated them
Monday - Ran colony PCR on transformed samples; seems to confirm successful ligation (see pics below): - Picked up lyophilized cells; resuspended first in 50 mL of 50 mM Tris-HCl (pH 7.5); A280 ~ .72, A488 ~ .13; however, looked cloudy (possible aggregation?), so centrifuged at 13K rpm for 10 minutes, and UV-vised the supernatant, A280 ~ .23, A488 ~ .04, suggesting around 75% was aggregated. Tried again to resuspend in 100 mL Tris-HCl and adding 50 mM NaCl; still no good; tried adding acid and killed protein activity
Tuesday - Miniprepped successful colony PCRs and submitted samples for sequencing - Prepared more buffers for protein purification - Transformed eGFP and eGFP-RiAFP and RiAFP cells
Wednesday - Protein purification round 2! - Innoculated eGFP, eGFP-RiAFP, and RiAFP cells
