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Modeling
From 2011.igem.org
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| - | [[Module 1]] | + | Because of the device-like nature of out project modeling plays a big part. This page gives an overview of some of our organistional considerations and provides links to the more practical aspects. |
| + | |||
| + | ==Methods== | ||
| + | First of all we have to decide in what enviorment we want to model in. There is a lot of different software out there. Our 2009 team did a large survey on modeling packages used in Igem [[https://2009.igem.org/Team:Groningen/Brainstorm/Modelling]]. Our [[Whitebook|whitebook]] also included several biomodeling packages that we should look at: | ||
| + | *[[SynBioSS]] | ||
| + | *[[SimBiology]] | ||
| + | *[[CellDesigner]] | ||
| + | *[[COPASI]] | ||
| + | *[[Matlab]] | ||
| + | |||
| + | |||
| + | ==Modules== | ||
| + | We decided to build our model in the samen modules as the cloners will use. Because of the fragilety of the by stable switches these should be modeled first. | ||
| + | *[[Module 1]] | ||
Revision as of 08:28, 10 May 2011
Because of the device-like nature of out project modeling plays a big part. This page gives an overview of some of our organistional considerations and provides links to the more practical aspects.
Methods
First of all we have to decide in what enviorment we want to model in. There is a lot of different software out there. Our 2009 team did a large survey on modeling packages used in Igem [[1]]. Our whitebook also included several biomodeling packages that we should look at:
Modules
We decided to build our model in the samen modules as the cloners will use. Because of the fragilety of the by stable switches these should be modeled first.
