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From 2011.igem.org

Revision as of 18:52, 8 July 2011 (view source) Jwchew (Talk | contribs) ← Older edit		Revision as of 18:54, 8 July 2011 (view source) Jwchew (Talk | contribs) Newer edit →
Line 79:		Line 79:
	//get DNA sequence		//get DNA sequence
-	var testseq = $("#sequence").val();	+	var testseq = $("#sequence").val().toUpperCase();
-	//to uppercase	+
-	testseq = testseq.toUpperCase();	+
	//get zinc finger arrays for searching		//get zinc finger arrays for searching
-	var bottomzf = $("#bottom").val();	+	var bottomzf = $("#bottom").val().toUpperCase();
-	var topzf = $("#top").val();	+	var topzf = $("#top").val().toUpperCase();
-	//to uppercase	+
-	bottomzf = bottomzf.toUpperCase();	+
-	topzf = topzf.toUpperCase();	+
-		+
-	var ntpCheck = /[GCTAN]{9}/;	+
-	if (!(bottomzf.match(ntpCheck)&&	+
-	topzf.match(ntpCheck)&&	+
-	(bottomzf.length=="9")&&	+
-	(topzf.length=="9"))){	+
-	alert("You must enter a valid sequence of nine nucleotides containing G,T,C,A, or N.");	+
-	return;	+
-	}	+
-		+
-	//transform bottom zf to reverse complement	+
-	bottomzf = reverseComplement(bottomzf);	+
	alert(bottomzf);		alert(bottomzf);

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Revision as of 18:54, 8 July 2011

iGEM 2011 Zinc Finger Binding Site Finder

Justin Chew

Insert DNA sequence here
Bottom Zinc Finger Array: GNN CNN TNN ANN NNN GNN CNN TNN ANN NNN GNN CNN TNN ANN NNN	Top Zinc Finger Array: GNN CNN TNN ANN NNN GNN CNN TNN ANN NNN GNN CNN TNN ANN NNN	Nucleotide Gap: 5 6 7