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Team:Harvard/ZF Binding Site Finder
From 2011.igem.org
(Difference between revisions)
| Line 75: | Line 75: | ||
}); | }); | ||
| + | // findCustom function | ||
| + | $("#findcustom").click(function() { | ||
| + | |||
| + | //get DNA sequence | ||
| + | var testseq = $("#sequence").val(); | ||
| + | //to uppercase | ||
| + | testseq = testseq.toUpperCase(); | ||
| + | |||
| + | //get zinc finger arrays for searching | ||
| + | var bottomzf = $("#bottom").val(); | ||
| + | var topzf = $("#top").val(); | ||
| + | //to uppercase | ||
| + | bottomzf = bottomzf.toUpperCase(); | ||
| + | topzf = topzf.toUpperCase(); | ||
| + | |||
| + | var ntpCheck = /[GCTAN]{9}/; | ||
| + | if (!(bottomzf.match(ntpCheck)&& | ||
| + | topzf.match(ntpCheck)&& | ||
| + | (bottomzf.length=="9")&& | ||
| + | (topzf.length=="9"))){ | ||
| + | alert("You must enter a valid sequence of nine nucleotides containing G,T,C,A, or N."); | ||
| + | return; | ||
| + | } | ||
| + | |||
| + | //transform bottom zf to reverse complement | ||
| + | bottomzf = reverseComplement(bottomzf); | ||
| + | |||
| + | alert(bottomzf); | ||
| + | alert(topzf); | ||
| + | |||
| + | }); | ||
// end jQuery | // end jQuery | ||
Revision as of 18:52, 8 July 2011
