Team:Tokyo Tech/DataPage.htm

From 2011.igem.org

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Project
Project
<ul>
<ul>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">RPS-game</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">RPS-Game</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">rain</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">Make it Rain</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">urea cooler</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">Urea Coolers</a></li>
</ul>
</ul>
</li>
</li>
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Modeling
Modeling
<ul>
<ul>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/RPS-game/RPS-game">RPS-game</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/RPS-game/RPS-game">RPS-Game</a></li>
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<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/Urea-cooler/urea-cooler">urea cooler</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/Urea-cooler/urea-cooler">Urea Coolers</a></li>
</ul>
</ul>
</li>
</li>
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<h1> Data page </h1>
<h1> Data page </h1>
-
        <p>
+
<p>
-
              This page shows a list of all the parts that we have made or used in the project. Click on the link for each part to see  
+
This page shows a list of all the parts that  
-
              more details about that part on the Registry of Standard Biological Parts. For a brief overview of our main results,  
+
we have made or used in the project.  
-
              please have a look at our Main Results page.
+
Click on the link for each part to see  
-
        </p>
+
more details about that part on the  
 +
Registry of Standard Biological Parts.  
 +
For a brief overview of our main results,  
 +
please have a look at our Main Results page.
 +
</p>
          
          
-
        <h2 id="system">1. How our system Works</h2>
+
<h2 id="system">1. How our system Works</h2>
-
              <img src="https://static.igem.org/mediawiki/2011/7/71/Allinone.png" alt="allinone"  width="800px"　/>
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<img src="https://static.igem.org/mediawiki/2011/7/71/Allinone.png" alt="allinone"  width="800px"　/>
-
        <h2 id="new_parts">2. Data For Our Favorite New Parts</h2>
+
<h2 id="new_parts">2. Data For Our Favorite New Parts</h2>
      
      
-
              <ul style="list-style-type: none;">
+
<ul>
-
        <li>     
+
<li>     
-
                                        <a href="http://partsregistry.org/Part:BBa_K649001">Main Page</a>
+
<a href="http://partsregistry.org/Part:BBa_K649001">Main Page</a>
-
                                        – GFP regulated by 3OC12-HSL and LasR,  BBa_K649001: in the presence of 3OC12-HSL, lasI  
+
-- GFP regulated by 3OC12-HSL and LasR,  BBa_K649001: in the presence of 3OC12-HSL, lasI  
-
                                        promoter can be induced to express a marker gene(gfp).
+
promoter can be induced to express a marker gene(<span class="gene">gfp</span>).
-
                                </li>
+
</li>
-
                                <li>
+
-
                                        <a href="http://partsregistry.org/Part:BBa_K649202">Main Page</a>
+
<li>
-
                                        – PlacIQ-lox71-rbs-rfp-TT-lox66-rbs-gfp-
+
<a href="http://partsregistry.org/Part:BBa_K649202">Main Page</a>
-
                                        TT, BBa_K649202: in the presence of Cre, a marker gene (rfp) between lox71 and lox66 is  
+
-- PlacIQ-lox71-rbs-rfp-TT-lox66-rbs-gfp-
-
                                        knockout, and a marker gene (gfp) is expressed.
+
TT, BBa_K649202: in the presence of Cre, a marker gene (<span class="gene">rfp</span>) between lox71 and lox66 is  
-
                                </li>
+
knockout, and a marker gene (<span class="gene">gfp</span>) is expressed.
-
                                <li>
+
</li>
-
                                        <a href="http://partsregistry.org/Part:BBa_K649301">Main Page</a>
+
-
                                        – Ptrc-rbs-rocF, BBa_K649301: because  
+
<li>
-
                                        arginase is constitutively expressed, the expression level of urea in <span class="name">E. coli</span> transformed with  
+
<a href="http://partsregistry.org/Part:BBa_K649301">Main Page</a>
-
                                        BBa_K649301 was higher than geneless <span class="name">E. coli</span>.
+
-- Ptrc-rbs-rocF, BBa_K649301: because  
-
                                </li>
+
arginase is constitutively expressed, the expression level of urea in <span class="name">E. coli</span> transformed with  
 +
BBa_K649301 was higher than geneless <span class="name">E. coli</span>.
 +
</li>
 +
</ul>
-
      </ul>
+
<h2 id="improve">3. Data For Pre-existing Parts</h2>
-
        <h2 id="improve">3. Data For Pre-existing Parts</h2>
+
<ul>
 +
<li>
 +
<a href="http://partsregistry.org/Part:BBa_J64010:Experience">Experience</a>
 +
-- lasI promoter, BBa_J64010
 +
(Voigt Lab, 2007): fluorescence intensity of PlasI (BBa_J64010) -gfp did not change before and 
 +
after 3OC12-HSL induction.
 +
</li>
 +
 +
<li>
 +
<a href="http://partsregistry.org/Part:BBa_I751101:Experience">Experience</a>
 +
- J540140 dPr + hybrid
 +
promoter (Plux-lac), BBa_I751101 (Tokyo Tech, 2007): fluorescence intensity of BBa_I751101 was
 +
increased by both 3OC6-HSL induction and IPTG induction.
 +
</li>
 +
 +
<li>
 +
<a href="http://partsregistry.org/Part:BBa_K117002:Experience">Experience</a>
 +
- LsrA promoter (indirectly
 +
activated by AI-2), BBa_K117002 (NTU-Singapore, 2008): in the absence of LsrR, fluorescence
 +
intensity of PlsrA (BBa_K117002) -- gfp was lower than that of promoterless negative control.
 +
</li>
 +
</ul>
-
                <ul style="list-style-type: none;">
+
<h2 id="chared">4. We’ve Also Characterized the Following Parts</h2>
-
<li>
+
-
                                        <a href="http://partsregistry.org/Part:BBa_J64010:Experience">Experience</a>
+
-
                                        – lasI promoter, BBa_J64010
+
-
                                        (Voigt Lab, 2007): fluorescence intensity of PlasI (BBa_J64010) -gfp did not change before and 
+
-
                                        after 3OC12-HSL induction.
+
-
                                </li>
+
-
                                <li>
+
-
                                        <a href="http://partsregistry.org/Part:BBa_I751101:Experience">Experience</a>
+
-
                                        - J540140 dPr + hybrid
+
-
                                        promoter (Plux-lac), BBa_I751101 (Tokyo Tech, 2007): fluorescence intensity of BBa_I751101 was
+
-
                                        increased by both 3OC6-HSL induction and IPTG induction.
+
-
                                </li>
+
-
                                <li>
+
-
                                        <a href="http://partsregistry.org/Part:BBa_K117002:Experience">Experience</a>
+
-
                                        - LsrA promoter (indirectly
+
-
                                        activated by AI-2), BBa_K117002 (NTU-Singapore, 2008): in the absence of LsrR, fluorescence
+
-
                                        intensity of PlsrA (BBa_K117002) – gfp was lower than that of promoterless negative control.
+
-
                                </li>
+
-
      </ul>
+
<ul>
-
 
+
<li>
-
        <h2 id="chared">4. We’ve Also Characterized the Following Parts</h2>
+
<a href="http://partsregistry.org/Part:BBa_K649104">Main Page</a>
-
 
+
-- PlsrA-rbs-gfp, BBa_K649104: in the  
-
                <ul style="list-style-type: none;">
+
absence of LsrR, fluorescence intensity of BBa_K649104 was much higher than promoterless-gfp  
-
<li>
+
(negative control).
-
                                          <a href="http://partsregistry.org/Part:BBa_K649104">Main Page</a>
+
</li>
-
                                          – PlsrA-rbs-gfp, BBa_K649104: in the  
+
-
                                          absence of LsrR, fluorescence intensity of BBa_K649104 was much higher than promoterless-gfp  
+
<li>  
-
                                          (negative control).
+
<a href="http://partsregistry.org/Part:BBa_K649105">Main Page</a>
-
                                </li>
+
-- PlsrA-rbs-gfp-TT-PlsrR-rbs-lsrR,  
-
                                <li>  
+
BBa_K649105: PlsrA (BBa_K649100) was repressed by LsrR and fluorescence intensity of BBa-
-
                                          <a href="http://partsregistry.org/Part:BBa_K649105">Main Page</a>
+
K649105 decreased 3-fold.
-
                                          – PlsrA-rbs-gfp-TT-PlsrR-rbs-lsrR,  
+
</li>
-
                                          BBa_K649105: PlsrA (BBa_K649100) was repressed by LsrR and fluorescence intensity of BBa-
+
-
                                          K649105 decreased 3-fold.
+
<li>
-
                                </li>
+
<a href="http://partsregistry.org/Part:BBa_K649200">Main Page</a>
-
                                <li>
+
-- PlacIQ-lox2272-rbs-gfp-lox2272,  
-
                                          <a href="http://partsregistry.org/Part:BBa_K649200">Main Page</a>
+
BBa_K649200: in the presence of Cre, a marker gene (<span class="gene">gfp</span>) between two lox2272 is knockout, and  
-
                                          – PlacIQ-lox2272-rbs-gfp-lox2272,  
+
fluorescence intensity was decreased.
-
                                          BBa_K649200: in the presence of Cre, a marker gene (gfp) between two lox2272 is knockout, and  
+
</li>
-
                                          fluorescence intensity was decreased.
+
-
　　　　　　　　　　　　　　　　    </li>
+
<li>
-
　                                  <li>
+
<a href="http://partsregistry.org/Part:BBa_K649201">Main Page</a>
-
                                          <a href="http://partsregistry.org/Part:BBa_K649201">Main Page</a>
+
- PlacIQ-lox2272-rbs-rfp-TT-lox2272-rbs-
-
                                          - PlacIQ-lox2272-rbs-rfp-TT-lox2272-rbs-
+
gfp, BBa_K649201: in the presence of Cre, a marker gene (<span class="gene">rfp</span>) between two lox2272 is  
-
                                          gfp, BBa_K649201: in the presence of Cre, a marker gene (rfp) between two lox2272 is  
+
knockout, and a marker gene (<span class="gene">gfp</span>) is expressed.
-
                                          knockout, and a marker gene (gfp) is expressed.
+
</li>
-
                                </li>
+
-
                                <li>
+
<li>
-
                                          <a href="http://partsregistry.org/Part:BBa_K649402">Main Page</a>
+
<a href="http://partsregistry.org/Part:BBa_K649402">Main Page</a>
-
                                          – Ptrc-RBS-rocF-Arg box, BBa_K649402: because Arg Box is the  
+
-- Ptrc-RBS-rocF-Arg box, BBa_K649402: because Arg Box is the  
-
                                          arginine operator capable of binding the arginine repressor, the expression level of urea in <span class="name">E. coli</span> transformed with  
+
arginine operator capable of binding the arginine repressor, the expression level of urea in <span class="name">E. coli</span> transformed with  
-
                                        BBa_K649402 was higher than geneless <span class="name">E. coli</span>.
+
BBa_K649402 was higher than geneless <span class="name">E. coli</span>.
-
                                </li>
+
</li>
-
      </ul>
+
</ul>
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Revision as of 08:34, 5 October 2011

Tokyo Tech 2011

Data page

This page shows a list of all the parts that we have made or used in the project. Click on the link for each part to see more details about that part on the Registry of Standard Biological Parts. For a brief overview of our main results, please have a look at our Main Results page.

1. How our system Works

allinone

2. Data For Our Favorite New Parts

  • Main Page -- GFP regulated by 3OC12-HSL and LasR, BBa_K649001: in the presence of 3OC12-HSL, lasI promoter can be induced to express a marker gene(gfp).
  • Main Page -- PlacIQ-lox71-rbs-rfp-TT-lox66-rbs-gfp- TT, BBa_K649202: in the presence of Cre, a marker gene (rfp) between lox71 and lox66 is knockout, and a marker gene (gfp) is expressed.
  • Main Page -- Ptrc-rbs-rocF, BBa_K649301: because arginase is constitutively expressed, the expression level of urea in E. coli transformed with BBa_K649301 was higher than geneless E. coli.

3. Data For Pre-existing Parts

  • Experience -- lasI promoter, BBa_J64010 (Voigt Lab, 2007): fluorescence intensity of PlasI (BBa_J64010) -gfp did not change before and after 3OC12-HSL induction.
  • Experience - J540140 dPr + hybrid promoter (Plux-lac), BBa_I751101 (Tokyo Tech, 2007): fluorescence intensity of BBa_I751101 was increased by both 3OC6-HSL induction and IPTG induction.
  • Experience - LsrA promoter (indirectly activated by AI-2), BBa_K117002 (NTU-Singapore, 2008): in the absence of LsrR, fluorescence intensity of PlsrA (BBa_K117002) -- gfp was lower than that of promoterless negative control.

4. We’ve Also Characterized the Following Parts

  • Main Page -- PlsrA-rbs-gfp, BBa_K649104: in the absence of LsrR, fluorescence intensity of BBa_K649104 was much higher than promoterless-gfp (negative control).
  • Main Page -- PlsrA-rbs-gfp-TT-PlsrR-rbs-lsrR, BBa_K649105: PlsrA (BBa_K649100) was repressed by LsrR and fluorescence intensity of BBa- K649105 decreased 3-fold.
  • Main Page -- PlacIQ-lox2272-rbs-gfp-lox2272, BBa_K649200: in the presence of Cre, a marker gene (gfp) between two lox2272 is knockout, and fluorescence intensity was decreased.
  • Main Page - PlacIQ-lox2272-rbs-rfp-TT-lox2272-rbs- gfp, BBa_K649201: in the presence of Cre, a marker gene (rfp) between two lox2272 is knockout, and a marker gene (gfp) is expressed.
  • Main Page -- Ptrc-RBS-rocF-Arg box, BBa_K649402: because Arg Box is the arginine operator capable of binding the arginine repressor, the expression level of urea in E. coli transformed with BBa_K649402 was higher than geneless E. coli.

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