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Team:TzuChiU Formosa/Notebook/photopaper
From 2011.igem.org
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<br><br><font color="#0000FF" size=4>Meeting Notes</font> | <br><br><font color="#0000FF" size=4>Meeting Notes</font> | ||
<Hr Align="left" width="100%" size=2> | <Hr Align="left" width="100%" size=2> | ||
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<br><font color="#000000" size=3><b>2011.02.24</b></font> | <br><font color="#000000" size=3><b>2011.02.24</b></font> | ||
<br><font size=3><b>Discussion:</b></font> | <br><font size=3><b>Discussion:</b></font> | ||
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*Team organization[[File:001.jpg|right|500px|caption]] | *Team organization[[File:001.jpg|right|500px|caption]] | ||
*Brain storming | *Brain storming | ||
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| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.03.04</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
*Team advisory | *Team advisory | ||
*Brain storming | *Brain storming | ||
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| - | == | + | |
| - | + | ||
| + | <br><font color="#000000" size=3><b>2011.03.14</b></font> | ||
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
*Task Allocation | *Task Allocation | ||
*Brain storming | *Brain storming | ||
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| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.03.23</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
**Project : paperia | **Project : paperia | ||
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| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.03.24</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
* Exp. procedure: | * Exp. procedure: | ||
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| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.06.22</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
* Due to some unforseen reason, the team decided to change their project. | * Due to some unforseen reason, the team decided to change their project. | ||
* New project: Biojenny | * New project: Biojenny | ||
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-yeast to be our host | -yeast to be our host | ||
| - | == | + | |
| - | + | ||
| + | <br><font color="#000000" size=3><b>2011.07.01</b></font> | ||
| + | <br><font size=3><b>Discussion:</b></font> | ||
* Freeze > grin > genome DNA isolation > Cloning = silk protein gene | * Freeze > grin > genome DNA isolation > Cloning = silk protein gene | ||
| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.07.09</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
* the connections between 3 silk proteins : Fibl Fibh P25 | * the connections between 3 silk proteins : Fibl Fibh P25 | ||
* major proteins : H-chain, L-chain, P25 | * major proteins : H-chain, L-chain, P25 | ||
| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.07.15</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
* Due to limited resources and techniques required, the team decided to switch back to the previous project. Paper making ! | * Due to limited resources and techniques required, the team decided to switch back to the previous project. Paper making ! | ||
* However it would be modified to be more innovative and creative. | * However it would be modified to be more innovative and creative. | ||
| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.07.18</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
| + | |||
* Latest project : Photo paper | * Latest project : Photo paper | ||
* cyanobacteria is designed as the host, cellulose made up of the glucose produced by cyanobacteria could be one of the main attraction of the project. | * cyanobacteria is designed as the host, cellulose made up of the glucose produced by cyanobacteria could be one of the main attraction of the project. | ||
| - | == | + | |
| - | + | <br><font color="#000000" size=3><b>2011.07.23</b></font> | |
| + | <br><font size=3><b>Discussion:</b></font> | ||
* system modification to overcome the problems arises during preliminary round | * system modification to overcome the problems arises during preliminary round | ||
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| - | == | + | |
| + | <br><font color="#000000" size=3><b>2011.09.15</b></font> | ||
'''Genome miniprep'''<br> | '''Genome miniprep'''<br> | ||
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| - | == | + | <br><font color="#000000" size=3><b>2011.09.18</b></font> |
'''Gel/PCR DNA extraction'''<br> | '''Gel/PCR DNA extraction'''<br> | ||
Revision as of 18:22, 3 October 2011
Photopaper
Meeting Notes
2011.02.24
Discussion:
- Team organization
- Brain storming
- paper made by bacteria with add-ons such as colors, fragrance, etc.
- "light up" the plants for replacing lamp posts.
2011.03.04
Discussion:
- Team advisory
- Brain storming
- Add-ons: colorful cellulose which produced by bacteria such as beta-carotene
- information exchange with iGEM 2009 Cambridge team
2011.03.14
Discussion:
- Task Allocation
- Brain storming
- Avatar - "light up" the plants by transfecting symbiotic bacteria which cloned into fluorescence gene
- Eco-friendly warmer - biotic thermal pad
2011.03.23
Discussion:
- Project : paperia
- Option 1 : Culture bacteria which has pigment gene
- Option 2 : Cellulose-producing bacteria secrete pigment into the medium
2011.03.24
Discussion:
- Exp. procedure:
- cloning of cellulose gene’s CDS
- the product should operate within E. coli.
2011.06.22
Discussion:
- Due to some unforseen reason, the team decided to change their project.
- New project: Biojenny
-economical and humane way to produce paper in large quantities.
-yeast to be our host
2011.07.01
Discussion:
- Freeze > grin > genome DNA isolation > Cloning = silk protein gene
2011.07.09
Discussion:
- the connections between 3 silk proteins : Fibl Fibh P25
- major proteins : H-chain, L-chain, P25
2011.07.15
Discussion:
- Due to limited resources and techniques required, the team decided to switch back to the previous project. Paper making !
- However it would be modified to be more innovative and creative.
2011.07.18
Discussion:
- Latest project : Photo paper
- cyanobacteria is designed as the host, cellulose made up of the glucose produced by cyanobacteria could be one of the main attraction of the project.
2011.07.23
Discussion:
- system modification to overcome the problems arises during preliminary round
- Biobricks from Tokyo 2010 team will be utilized
- regulator promoter in order to regulate the secretion of cellulose to solve the aggregation of the bacteria
2011.09.15
Genome miniprep
Gluconacetobacter hansenii
2011.09.18
Gel/PCR DNA extraction
Gluconacetobacter hansenii
Contents |
Protocols
2011.09.07
Rhodobacter rudrum medium
K2HPO4 1g
NaCl 0.5g
FeSO4．7H2O 0.01g
CaCl2 0.02g
MnCl2．4H2O 0.002g
MgSO4．7H2O 0.2g
NaMO2O4．2H2O 0.01g
ddH2O 998.258ml
________________________________________
1L →take100ml
＋
Yeast Extrat 0.5g
Sodium malate
(Sodium succinate dibasic hexohydrate) 5g
NH4Cl 1g
ddH2O 893.5ml
_________________________________________________
1L
Raise E. coli(PSB1C3)
1.50ml LB+500μl CHLORAMPHENICOL
2.37℃, overnight (14-16hrs)
2011.09.08-13
Plasmid miniprep kit
PSB1C3 plasmid
Raise Rhodobacter rubrum
1.50ml LB+500μl CHLORAMPHENICOL
2.37℃, overnight (14-16hrs)
2011.09.09
Raise Gluconacetobacter hansenii
1.50ml LB+500μl CHLORAMPHENICOL
2.37℃, overnight (14-16hrs)
2011.09.10-11
Digestion check of DNA
[pSB1C3/EcoRI]
DNA 500ng
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
ddH2O 29μl
_______________________________
total 50μl
[pSB1C3/PstⅠ]
DNA 500ng
10×buffer 5μl
BSA 5μl
pstⅠ 1μl
ddH2O 29μl
_________________________________
total 50μl
Digestion of DNA
[pSB1C3/EcoRⅠ+PstⅠ]
DNA 500ng
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
pstⅠ 1μl
ddH2O 28μl
__________________________________
total 50μl
→37℃ for 30 mins
[pSB1C3/XbaⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
XbaⅠ 1μl
SpeⅠ 1μl
ddH2O 28μl
____________________________________
total 50μl
→37℃ for 2 hrs
[pSB1C3/SpeⅠ+PstⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
SpeⅠ 1μl
pstⅠ 1μl
ddH2O 28μl
____________________________________
total 50μl
→37℃ for 2 hrs
[pSB1C3/EcoRⅠ+XbaⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
XbaⅠ 1μl
ddH2O 28μl
____________________________________
total 50μl
→37℃ for 2 hrs
[pSB1A3/EcoRⅠ+PstⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
PstⅠ 1μl
ddH2O 28μl
____________________________________
total 50μl
→37℃ for 2 hrs
[pSB1A3/EcoRⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
SpeⅠ 1μl
ddH2O 28μl
____________________________________
total 50μl
→37℃ for 2 hrs
electroelution Purification
[pSB1C3/EcoRⅠ+PstⅠ]
[pSB1C3/XbaⅠ+SpeⅠ]
[pSB1C3/SpeⅠ+PstⅠ]
[pSB1C3/EcoRⅠ+XbaⅠ]
[pSB1A3/EcoRⅠ+PstⅠ]
[pSB1A3/EcoRⅠ+SpeⅠ]
2011.09.12-20
PCR
[acsAB]
[acsCD]
[cmcax-ccp]
template DNA 1μl
5×Buffer 4μl
2.5μM dNTP 1.6μl
10μM F 1μl
10μM R 1μl
Taq 0.2μl
ddH2O 8.8μl
_______________________________
total 20μl
electroelution Purification
[acsAB]
[acsCD]
[cmcax-ccp]
2011.09.21
Digestion of DNA
[acsAB/ XbaⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
pstⅠ 1μl
ddH2O 28μl
____________________________
total 50μl
→37℃ for 16 hr
[acsCD/XbaⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
XbaⅠ 1μl
SpeⅠ 1μl
ddH2O 28μl
__________________________________
total 50μl
→37℃ for 16 hr
[CMCax/SpeⅠ+AlwNⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
SpeⅠ 1μl
AlwNⅠ 1μl
ddH2O 28μl
__________________________________
total 50μl
→37℃ for 16 hr
[Ccp/AlwNⅠ+PstⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
AlwNⅠ 1μl
PstⅠ 1μl
ddH2O 28μl
__________________________________
total 50μl
→37℃ for 16 hr
2011.09.22
Ligation of DNA
[pSB1C3-acsAB]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
________________________________
total 20μl
→16℃ for 16 hr
[pSB1A3-acsCD]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
_________________________________
total 20μl
→16℃ for 16 hr
[pSB1C3-acsCD]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
_________________________________
total 20μl
→16℃ for 16 hr
[pSB1C3-CMCax-Ccp]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
_________________________________
total 20μl
→16℃ for 16 hr
2011.09.23
PCR
R0011 promoter 1μl
5×Buffer 4μl
2.5μM dNTP 1.6μl
Taq 0.2μl
ddH2O 13.2μl
_____________________________________
total 20μl
Transformation of DNA
pSB1C3-acsAB
Transform into E.coli
LB+CHLORAMPHENICOL
→37℃ for 14 hr
pSB1C3-acsCD
Transform into E.coli
LB+CHLORAMPHENICOL
→37℃ for 14 hr
pSB1A3-acsCD
Transform into E.coli
LB+Ampicillin
→37℃ for 14 hr
pSB1C3-CMCax-Ccp
Transform into E.coli
LB+CHLORAMPHENICOL
→37℃ for 14 hr
Digestion of DNA
[R0011 promoter/EcoRⅠ+XbaⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
XbaⅠ 1μl
ddH2O 28μl
____________________________
total 50μl
→37℃ for 16 hr
2011.09.24
Ligation of DNA
[pSB1C3-R0011]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
________________________________
total 20μl
→16℃ for 16 hr
[R0011-acsAB]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
________________________________
total 20μl
→16℃ for 16 hr
[R0011-acsCD]
Vector 3μl
Insert 14μl
ligase buffer 2μl
ligase 1μl
ddH2O -μl
________________________________
total 20μl
→16℃ for 16 hr
2011.09.24
Digestion of DNA
[R0011-acsAB/EcoRⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
SpeⅠ 1μl
ddH2O 28μl
____________________________
total 50μl
→37℃ for 16 hr
[R0011-acsCD/EcoRⅠ+SpeⅠ]
DNA 10μl
10×buffer 5μl
BSA 5μl
EcoRⅠ 1μl
SpeⅠ 1μl
ddH2O 28μl
____________________________
total 50μl
→37℃ for 16 hr
