Team:ZJU-China/Notebook/September

From 2011.igem.org

(Difference between revisions)
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</div>
</div>
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<h4>Protocol</h4>
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<div class="pane"><a href="https://2011.igem.org/Team:ZJU-China/Protocol">>>Click to see our lab protocol about biofilm</a></div>
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  </div>
  </div>
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   <div class="bigblock">
   <div class="bigblock">
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<div class="block" id="nsheet">
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<div class="block" id="nsheet">  
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<h3>Week9</h3><hr/>
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<h3>Week1</h3><hr/>  
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<table id="notesheet" width="650" border="1" cellspacing="0" cellpadding="1">
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<table id="notesheet" width="650" border="1" cellspacing="0" cellpadding="1">  
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   <tr><td width="76">Day</td><td width="349">Note</td></tr>
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   <tr><td width="76">Day</td><td width="349">Note</td></tr>  
    
    
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   <tr>
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   <tr>  
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     <td id="sheetleft">Aug.29th
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     <td id="sheetleft">Jul.4th Monday</td>  
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Monday
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     <td><table id="intable" width="328" border="0" cellspacing="0" cellpadding="1">  
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</td>
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     <td><table id="intable" width="603" border="0" cellspacing="0" cellpadding="1">
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-
     <td width="191">• Meeting. Summarize all the experiment work so far.
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     <td width="128">• Aerobic cultivation of DH5α</td>  
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</td>
+
    
    
    
    
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     <td width="249" >• Cut: 22M(X+P), 1C3(E+P)
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     <td width="196">• Preparation of apparatus for the formation of biofilm</td>  
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</td>
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-
 
+
    
    
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</table></td>
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</table></td>  
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   </tr>
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   </tr>  
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   <tr>
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   <tr>  
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     <td id="sheetleft">Aug.30th
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     <td id="sheetleft">Jul 5th Tuesday
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Tuesday
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</td>  
-
 
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     <td>&nbsp;</td>  
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   </tr>  
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   <tr>  
-
 
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     <td id="sheetleft">Jul.6th
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</td>
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     <td><table id="intable" width="615" border="0" cellspacing="0" cellpadding="1">
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</table></td>
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   </tr>
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   <tr>
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     <td id="sheetleft">Aug.31st
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Wednesday
Wednesday
-
 
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</td>  
-
 
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     <td><table width="217" border="0" cellspacing="0" cellpadding="1">  
-
 
+
   <tr>  
-
 
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    <td width="215">•Receiving  primers ordered previously</td>  
-
 
+
   
-
</td>
+
   </tr>  
-
     <td><table width="640" border="0" cellspacing="0" cellpadding="1">
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</table>  
-
   <tr>
+
</td>  
-
  <td>• Cut vgb+YFP+tetR, fdhF+RFP+tetR.<br/>• Run the digestion results</td>
+
   </tr>  
-
  <td>• Culture the positive results</td>
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   <tr>  
-
   </tr>
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     <td id="sheetleft">Jul.7th
-
</table>
+
-
</td>
+
-
   </tr>
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-
   <tr>
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-
     <td id="sheetleft">Sept.1st
+
Thursday
Thursday
-
 
+
</td>  
-
 
+
     <td><table width="238" border="0" cellspacing="0" cellpadding="1">  
-
 
+
   <tr>  
-
 
+
    <td width="200">• Preparation of the aliquot of the primers</td>  
-
 
+
    <td width="200">• Something wrong with a shaking incubator</td>  
-
</td>
+
   </tr>  
-
     <td><table width="618" border="0" cellspacing="0" cellpadding="1">
+
</table>  
-
   <tr>
+
</td>  
-
 
+
   </tr>  
-
<td>• Miniprep: Y#4, R#2/3/4/5<br/>
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   <tr>  
-
• Cut Y#4, R#2/3/4/5
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     <td id="sheetleft">Jul.8th
-
</td>
+
-
<td>•Run the gel.<br/>
+
-
• Send R#3,Y#4 sample to sequencing
+
-
</td>
+
-
<td>• Hypoxia culture: RFP3, RFP4<br/>
+
-
• Preserve Y#4, R#2/3/4/5
+
-
</td>
+
-
   </tr>
+
-
</table>
+
-
</td>
+
-
   </tr>
+
-
   <tr>
+
-
     <td id="sheetleft">Sept.2nd
+
Friday
Friday
-
 
+
</td>  
-
 
+
     <td><table width="222" border="0" cellspacing="0" cellpadding="1">  
-
 
+
       <tr>  
-
</td>
+
        <td width="155">• Preparation of culture plates for the transformations</td>  
-
     <td><table width="627" border="0" cellspacing="0" cellpadding="1">
+
       </tr>  
-
       <tr>
+
     </table></td>  
-
      <td >• Phusion PCR</td>
+
   </tr>  
-
      <td>• Hypoxia Culture: R, Y<br/>
+
   <tr>  
-
• Run the PCR results. Bands are confirmed right.
+
     <td id="sheetleft">Jul.9th
-
</td>
+
-
<td>• Purification: vgb, YFP, tetR.</td>
+
-
       </tr>
+
-
     </table></td>
+
-
   </tr>
+
-
   <tr>
+
-
     <td id="sheetleft">Sept.3rd
+
Saturday
Saturday
-
 
+
</td>  
-
 
+
     <td><table width="313" border="0" cellspacing="0" cellpadding="1">  
-
 
+
   <tr>  
-
</td>
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     <td width="127">• Preparation of culture plates for the transformations</td>  
-
     <td><table width="620" border="0" cellspacing="0" cellpadding="1">
+
    <td width="182">• protocols of transformation</td>  
-
   <tr>
+
   </tr>  
-
     <td>• Culture: YFP, RFP, A25<br/>
+
</table>  
-
• Culture in micro-oxygen: YFP, RFP, A25
+
</td>  
-
</td>
+
   </tr>  
-
  <td>• Culture in slope medium: RFP, YFP, A25<br/>
+
   <tr>  
-
• Hypoxia culture: RFP, YFP, A25
+
     <td id="sheetleft">Jul.10th
-
</td>
+
-
<td>• Check the fluorescence.<br/>
+
-
• Neither RFP in hypoxia or oxygen condition.
+
-
Little YFP both in hypoxia and oxygen.
+
-
</td>
+
-
   </tr>
+
-
</table>
+
-
</td>
+
-
   </tr>
+
-
   <tr>
+
-
     <td id="sheetleft">Sept.4th
+
Sunday
Sunday
-
 
+
</td>  
-
 
+
     <td><table width="246" border="0" cellspacing="0" cellpadding="1">  
-
</td>
+
       <tr>  
-
     <td><table width="620" border="0" cellspacing="0" cellpadding="1">
+
         <td>• Several colonies were picked up and cultivated in  5mL LB medium.
-
       <tr>
+
•Cryosectioning of biofilm
-
         <td width="244">• Miniprep: RFP3, YFP4
+
</td>  
-
 
+
       </tr>  
-
</td>
+
     </table></td>  
-
<td width="164">• Cut: RFP3, YFP4, !C3.
+
   </tr>  
-
</td>
+
-
 
+
</table>  
-
       </tr>
+
-
     </table></td>
+
-
   </tr>
+
-
 
+
-
</table>
+
<p>&nbsp;</p>  
<p>&nbsp;</p>  
-
</div>
 
-
 
-
<div class="block" id="nsheet">
 
-
<h3>Week10</h3><hr/>
 
-
<table id="notesheet" width="650" border="1" cellspacing="0" cellpadding="1">
 
-
  <tr><td width="76">Day</td><td width="349">Note</td></tr>
 
-
 
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.5th
 
-
Monday
 
-
 
-
</td>
 
-
    <td><table id="intable" width="603" border="0" cellspacing="0" cellpadding="1">
 
-
 
 
-
    <td width="191">• Run the gel: Yu’s PCR results, 1C3, RFP3, YFP4<br/>
 
-
• Purification: RFP3, YFP4
 
-
 
-
</td>
 
-
 
 
-
 
 
-
    <td  >• Ligation: RFP3+1C3, YFP4+1C3<br/>
 
-
• Hypoxia culture: RFP3, YFP4, A25.
 
-
 
-
</td>
 
-
<td>• Transform the ligation results.<br/>
 
-
• Confirmed RFP expression only in hypoxia condition.
 
-
</td>
 
-
 
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.6th
 
-
Tuesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table id="intable" width="615" border="0" cellspacing="0" cellpadding="1">
 
-
  <td>• Check the RFP, YFP plates.</td>
 
-
  <td>• Colony PCR</td>
 
-
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.7th
 
-
Wednesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="640" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
  <td>• Culture YFP1/2, RFP3/4</td>
 
-
 
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.8th
 
-
Thurday
 
-
 
-
 
-
</td>
 
-
    <td><table width="618" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
 
 
-
<td>• Preserve the strain of RFP1, YFP1/2 in 1C3.<br/>
 
-
• Miniprep the remains.
 
-
 
-
</td>
 
-
<td>• Cut: YFP1/2, RFP1
 
-
</td>
 
-
<td>• Run the digestion results.<br/>
 
-
• Culture RFP2
 
-
 
-
</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.9th
 
-
Friday
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="627" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
      <td >• Miniprep: RFP2, YFP2, RFP1</td>
 
-
      <td>• Cut them and run the gel.
 
-
</td>
 
-
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.10th
 
-
Saturday
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
    <td>• Cut YFP(1A3), RFP(1A3) with S+E
 
-
 
-
 
-
</td>
 
-
  <td>• Purification: RFP(1A3), YFP(1A3)
 
-
</td>
 
-
<td>• Ligation: RFP+1C3, YFP+1C3
 
-
</td>
 
-
<td>• Transform the ligation results.</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.11th
 
-
Sunday
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
        <td width="244">• Check the plates.
 
-
 
-
</td>
 
-
<td width="164">• Culture lig RFY+YFP+IC3<br/>
 
-
• Culture 1K3
 
-
 
-
</td>
 
-
<td>• Colony PCR: RFP(1C3), YFP(1C3)</td>
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
 
-
</table>
 
-
<p>&nbsp;</p>
 
-
</div>
 
-
<div class="block" id="nsheet">
 
-
<h3>Week11</h3><hr/>
 
-
 
-
<table id="notesheet" width="650" border="1" cellspacing="0" cellpadding="1">
 
-
  <tr><td width="76">Day</td><td width="349">Note</td></tr>
 
-
 
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.12th
 
-
Monday
 
-
 
-
 
-
</td>
 
-
    <td><table id="intable" width="603" border="0" cellspacing="0" cellpadding="1">
 
-
 
 
-
    <td width="191">• Colony PCR: 1A3, 1K3, lig RFP+YFP+1C3.
 
-
 
-
</td>
 
-
 
 
-
 
 
-
    <td  >• Run the PCR results.
 
-
 
-
</td>
 
-
<td>• Miniprep: lig RFP+YFP+1C3
 
-
</td>
 
-
 
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.13th
 
-
Tuesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table id="intable" width="615" border="0" cellspacing="0" cellpadding="1">
 
-
  <td>• Transform 2M, 2I, 6I, 23L.</td>
 
-
  <td>• Purification: 1K3</td>
 
-
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.14th
 
-
Wednesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="640" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
  <td>• Miniprep: 20H, 20J, 22B</td>
 
-
  <td>• Cut: 1K3 with E+P, lig3 with S+E, 12I(CFP) with P+X,</td>
 
-
  <td>• Gel excision and /or purification: 1K3, lig3, 12I(CFP)</td>
 
-
  <td>• Run the gel.<br/>
 
-
• Culture: 1I, 1K, 3L, 5E, 7C
 
-
</td>
 
-
<td>• Miniprep: RFP+YFP+1C3.<br/>
 
-
• Run the gel of 1K3, lig3, CFP again.
 
-
</td>
 
-
<td>• Gel excision and purification<br/>
 
-
• Ligation: Lig3+CFP+1K3
 
-
</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.15th
 
-
Thursday
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="618" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
 
 
-
<td>• Preserve: 1I, 1K, 3C, 5E, 7C<br/>
 
-
• Transform the ligation results
 
-
</td>
 
-
<td>• Colony PCR: 2M, 2I,6I,23L<br/>
 
-
• Cut: 20H, 20J, 22B with X+P
 
-
 
-
</td>
 
-
<td>• Miniprep: 2M-1, 2I-1, 6I-1, 23L-1<br/>
 
-
• Cut: 2M, 2I with E+S
 
-
 
-
 
-
</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.16th
 
-
Friday
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="627" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
      <td >• Colony PCR: RFP+YFP+1K3</td>
 
-
      <td>• Cut 13K with E+S, 10I with P+X, 1C3 with E+P
 
-
</td>
 
-
<td>• Run the gel: 13K, 10I, 1C3, 2I, 2M, 20J, 22H, 22B</td>
 
-
<td>• Ligation: 13K+10I+1C3<br/>
 
-
• Culture: YFP(Amp), CFP(Amp)
 
-
</td>
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.17th
 
-
Saturday
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
    <td>• Order primers for 20H, 20J<br/>
 
-
• Culture 20H-1, 20J-1, 22B-1
 
-
</td>
 
-
  <td>• Plate the ligation results<br/>
 
-
• Culture RFP+YFP+CFP+1K3
 
-
 
-
</td>
 
-
<td>• Colony PCR: 3A, 1C3<br/>
 
-
• Preserve: 1K3, RFP+YFP+1C3.
 
-
 
-
</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.18th
 
-
Sunday
 
-
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
        <td width="244">• Miniprep: 20J, 20H, RFP+YFP+CFP+1K3
 
-
1A3
 
-
</td>
 
-
<td width="164">• Run the gel of PCR results
 
-
 
-
</td>
 
-
<td>• Cut RFP+YFP+CFP+1K3
 
-
with E+P<br/>
 
-
• Colony PCR: 13K+10I+1C3
 
-
</td>
 
-
<td>• PCR: fdhF+rush+Vgb+tetR<br/>
 
-
• Preserve: 20H, 20J, 22B
 
-
</td>
 
-
<td>• Run the gel: 20H, 20J, 22B<br/>
 
-
• Cut the bands and purification.
 
-
</td>
 
-
<td>• Run the gel: 13K+10I+1C3, RFP+YFP+CFP+1K3<br/>
 
-
• Culture: 13K+10I+1C3<br/>
 
-
• Grad PCR: fdhF.
 
-
</td>
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
 
-
</table>
 
-
<p>&nbsp;</p>
 
-
</div>
 
-
<div class="block" id="nsheet">
 
-
<h3>Week12</h3><hr/>
 
-
 
-
<table id="notesheet" width="650" border="1" cellspacing="0" cellpadding="1">
 
-
  <tr><td width="76">Day</td><td width="349">Note</td></tr>
 
-
 
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.19th
 
-
Monday
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table id="intable" width="603" border="0" cellspacing="0" cellpadding="1">
 
-
 
 
-
    <td width="191">• Miniprep: 13K+10I+1C3, 1C3<br/>
 
-
• Run the gel of digestion results.
 
-
 
-
</td>
 
-
 
 
-
 
 
-
    <td  >• Cut: 13K+10I+1C3, 1A3, fdhF
 
-
 
-
</td>
 
-
<td>• Run the gel: 20H, 20J, rush+vgb, RYC+1K3, fdhF, 13K+10I, 1A3
 
-
</td>
 
-
  <td>• Cut and purification: fdhF, 13K+10I, 1A3<br/>
 
-
• Culture: CFP, YFP
 
-
</td>
 
-
<td>• Purification: Rush PCR<br/>
 
-
• Cut: 22B with X, rush PCR results with S
 
-
</td>
 
-
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.20th
 
-
Tuesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table id="intable" width="615" border="0" cellspacing="0" cellpadding="1">
 
-
  <td>• Run the 20H, 20J from PCR results.<br/>
 
-
• Transform: fdhF+13K+10I+1A3
 
-
</td>
 
-
  <td>• Purification: 20B, Rush<br/>
 
-
• Ligation: 22B+Rush
 
-
</td>
 
-
<td>• Purification: ligation results<br/>
 
-
• Cut: the ligation results with X+S
 
-
</td>
 
-
<td>• PCR 20H<br/>
 
-
• Self-ligation: rush+22M
 
-
</td>
 
-
</table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.21st
 
-
Wednesday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="640" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
  <td>• Colony PCR: fdhF+13K+10I+1A3 on plates</td>
 
-
  <td>• Run the gel of PCR results</td>
 
-
  <td>• Culture the positive results.</td>
 
-
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.22nd
 
-
Thursday
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="618" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
 
 
-
<td>• Miniprep: fdhF+13K+10I+1A3<br/>
 
-
• Preserve the above.
 
-
 
-
</td>
 
-
<td>• Cut and run the results:
 
-
fdhF+13K+10I+1A3, 13K+10I+1C3
 
-
 
-
 
-
</td>
 
-
<td>• Cut: RFP with E+S, YFP with X+P, 1K3 with E+P, 1C3 with E+P
 
-
</td>
 
-
<td>• Purification the digestion results.</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.23rd
 
-
Friday
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="627" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
      <td >• Ligate: RFP+1A3/ YFP+1C3/1K3, RFP+1A3/1C3</td>
 
-
      <td>• Transform the ligation results.
 
-
</td>
 
-
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept. 24th
 
-
Saturday
 
-
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
  <tr>
 
-
    <td>• Order primers for 20H, 20J<br/>
 
-
• Culture 20H-1, 20J-1, 22B-1
 
-
</td>
 
-
  <td>• Plate the ligation results<br/>
 
-
• Culture RFP+YFP+CFP+1K3
 
-
 
-
</td>
 
-
<td>• Colony PCR: 3A, 1C3<br/>
 
-
• Preserve: 1K3, RFP+YFP+1C3.
 
-
 
-
</td>
 
-
  </tr>
 
-
</table>
 
-
</td>
 
-
  </tr>
 
-
  <tr>
 
-
    <td id="sheetleft">Sept.25th
 
-
Sunday
 
-
 
-
</td>
 
-
    <td><table width="620" border="0" cellspacing="0" cellpadding="1">
 
-
      <tr>
 
-
        <td width="244">• Miniprep: 20J, 20H, RFP+YFP+CFP+1K3
 
-
1A3
 
-
</td>
 
-
<td width="164">• Run the gel of PCR results
 
-
 
-
</td>
 
-
<td>• Cut RFP+YFP+CFP+1K3
 
-
with E+P<br/>
 
-
• Colony PCR: 13K+10I+1C3
 
-
</td>
 
-
<td>• PCR: fdhF+rush+Vgb+tetR<br/>
 
-
• Preserve: 20H, 20J, 22B
 
-
</td>
 
-
<td>• Run the gel: 20H, 20J, 22B<br/>
 
-
• Cut the bands and purification.
 
-
</td>
 
-
<td>• Run the gel: 13K+10I+1C3, RFP+YFP+CFP+1K3<br/>
 
-
• Culture: 13K+10I+1C3<br/>
 
-
• Grad PCR: fdhF.
 
-
</td>
 
-
      </tr>
 
-
    </table></td>
 
-
  </tr>
 
-
 
-
</table>
 
-
<p>&nbsp;</p>
 
</div>  
</div>  
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Revision as of 06:19, 3 October 2011

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Labnote

This group...........

Week1


DayNote
Jul.4th Monday
• Aerobic cultivation of DH5α • Preparation of apparatus for the formation of biofilm
Jul 5th Tuesday  
Jul.6th Wednesday
•Receiving primers ordered previously
Jul.7th Thursday
• Preparation of the aliquot of the primers • Something wrong with a shaking incubator
Jul.8th Friday
• Preparation of culture plates for the transformations
Jul.9th Saturday
• Preparation of culture plates for the transformations • protocols of transformation
Jul.10th Sunday
• Several colonies were picked up and cultivated in 5mL LB medium. •Cryosectioning of biofilm