Team:Queens Canada/Parts/Contributions
From 2011.igem.org
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<regulartext> <b> Method </b> </regulartext><br> | <regulartext> <b> Method </b> </regulartext><br> | ||
- | <regulartext> 1. Digest linear BioBrick part A with the SpeI FastDigestion system, and digest linear BioBrick part B with the XbaI FastDigestion system. | + | <regulartext> 1. Digest linear BioBrick part A with the SpeI FastDigestion system, and digest linear BioBrick part B with the XbaI FastDigestion system.��<br> |
- | 2. Perform enzymatic cleanup for one of the digest mixtures using EZ-10 PCR Product Purification kit. | + | 2. Perform enzymatic cleanup for one of the digest mixtures using EZ-10 PCR Product Purification kit.<br> |
- | 3. Mixing of the clean-up product and other digestion product in a 1:1 ratio to obtain a 10 µl mixture. | + | 3. Mixing of the clean-up product and other digestion product in a 1:1 ratio to obtain a 10 µl mixture.<br> |
- | 4. Use the 10 µl mixture and the Fast Ligase System to ligate the two BioBrick parts together | + | 4. Use the 10 µl mixture and the Fast Ligase System to ligate the two BioBrick parts together.<br> |
- | 5. Use the ligation product from the previous step as the template DNA for PCR amplification. Use the 10 µM solution of left primer of BioBrick part A and the 10 µM solution of right primer of BioBrick part B as primers for the PCR Amplification. | + | 5. Use the ligation product from the previous step as the template DNA for PCR amplification. Use the 10 µM solution of left primer of BioBrick part A and the 10 µM solution of right primer of BioBrick part B as primers for the PCR Amplification.<br> |
- | 6. Follow the instructions in the KAPA HiFi™ Hotstart Kit to perform the PCR reaction. Only 20 to 25 thermocycles are necessary to amplify the ligation product | + | 6. Follow the instructions in the KAPA HiFi™ Hotstart Kit to perform the PCR reaction. Only 20 to 25 thermocycles are necessary to amplify the ligation product.<br> |
- | 7. Create a 1% agarose gel for electrophoresis of the PCR products | + | 7. Create a 1% agarose gel for electrophoresis of the PCR products.<br> |
- | 8. With loading dye, load the entire digestion mixture to the 1% agarose gel. Perform gel electrophoresis at 100V and 400 mA for 60 minutes. | + | 8. With loading dye, load the entire digestion mixture to the 1% agarose gel. Perform gel electrophoresis at 100V and 400 mA for 60 minutes.<br> |
- | 9. Using transilluminator, gel extract the visible DNA product corresponding to the right length of the ligation product | + | 9. Using transilluminator, gel extract the visible DNA product corresponding to the right length of the ligation product.<br> |
- | 10. Follow the instructions in the Bio Basics EZ-10 Purification Kit, perform purification of the gel extracted products. | + | 10. Follow the instructions in the Bio Basics EZ-10 Purification Kit, perform purification of the gel extracted products.<br> |
- | 11. This gel extracted product may be used for further assembly and processing | + | 11. This gel extracted product may be used for further assembly and processing.<br> |
</regulartext> | </regulartext> | ||
Revision as of 18:10, 28 September 2011
2. Perform enzymatic cleanup for one of the digest mixtures using EZ-10 PCR Product Purification kit.
3. Mixing of the clean-up product and other digestion product in a 1:1 ratio to obtain a 10 µl mixture.
4. Use the 10 µl mixture and the Fast Ligase System to ligate the two BioBrick parts together.
5. Use the ligation product from the previous step as the template DNA for PCR amplification. Use the 10 µM solution of left primer of BioBrick part A and the 10 µM solution of right primer of BioBrick part B as primers for the PCR Amplification.
6. Follow the instructions in the KAPA HiFi™ Hotstart Kit to perform the PCR reaction. Only 20 to 25 thermocycles are necessary to amplify the ligation product.
7. Create a 1% agarose gel for electrophoresis of the PCR products.
8. With loading dye, load the entire digestion mixture to the 1% agarose gel. Perform gel electrophoresis at 100V and 400 mA for 60 minutes.
9. Using transilluminator, gel extract the visible DNA product corresponding to the right length of the ligation product.
10. Follow the instructions in the Bio Basics EZ-10 Purification Kit, perform purification of the gel extracted products.
11. This gel extracted product may be used for further assembly and processing.