Team:BU Wellesley Software/Notebook/ChenkaiNotebook

From 2011.igem.org

(Difference between revisions)
Line 49: Line 49:
*Friday 6/10
*Friday 6/10
Implemented tips of different sizes, 50ul, 100ul, 200ul
Implemented tips of different sizes, 50ul, 100ul, 200ul
 +
Removed duplicate entries from Puppeteer output
Removed duplicate entries from Puppeteer output
Implemented incubator functionality
Implemented incubator functionality
 +
*Monday 6/13
*Monday 6/13
Planned and implemented history recording, reaction history and incubation history
Planned and implemented history recording, reaction history and incubation history
 +
Got the robot moving and tested in the wetlab
Got the robot moving and tested in the wetlab
*Tuesday 6/14
*Tuesday 6/14
Swapped rows with columns to optimize robot pippetting
Swapped rows with columns to optimize robot pippetting
 +
Added feature to ResourceManager to combine liquids in multiple wells to minimize waste
Added feature to ResourceManager to combine liquids in multiple wells to minimize waste
*Wednesday 6/15
*Wednesday 6/15

Revision as of 15:37, 15 June 2011

Chenkai iGem Notebook

Work Stack

CURRENT-record reaction history, also protocol history

CURRENT-debugging purposes, log everything that happens

CHECK-add incubator

CHECK-add string name for wells and incubator slots, plates

CHECK-unique identifier for each well/sample

CHECK-fix duplicate restriction digests

CHECK-tip size, must specify

CHECK-if two wells have partial amounts, combine them

CHECK-swap column and row

-different buffer for each protocol

-using multiple tips

-be generic with plate dimensions, specifying locations (grid/site), this is only with the Tecan robots

-move transversing the tree out of assemblymanager, we want to a separate **program to annotated the tree and produce the protocol graph

-tell user when new plate gets allocated

-why does resourcemanager give the printout out of order? investigate

-fix naming, 3 parts (UUIDS,User defined names,auto-generated linearized tree name)

-save resourcemanager state

-Talk to Jeno about Puppetshow GUI

Work Diary

  • Wednesday 6/8

Just flew back from China, got to PHO209 at 4pm and caught up with other team members on what they are up to. Had a discussion with Viktor about the road ahead, what problems are on our to do list.

  • Thursday, 6/9

Found a fix to the sample name duplication issue, instead of using sample names to identify sample, we are now adding a new UUID field to each liquid, this 8 digit randomly generated code will make sure two no samples of the same content will be confused with each other.

  • Friday 6/10

Implemented tips of different sizes, 50ul, 100ul, 200ul

Removed duplicate entries from Puppeteer output Implemented incubator functionality


  • Monday 6/13

Planned and implemented history recording, reaction history and incubation history

Got the robot moving and tested in the wetlab

  • Tuesday 6/14

Swapped rows with columns to optimize robot pippetting

Added feature to ResourceManager to combine liquids in multiple wells to minimize waste

  • Wednesday 6/15