From 2011.igem.org
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| - | Because of the device-like nature of out project modeling plays a big part. This page gives an overview of some of our organistional considerations and provides links to the more practical aspects.
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| - | ==Methods==
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| - | First of all we have to decide in what enviorment we want to model in. There is a lot of different software out there. Our 2009 team did a large survey on modeling packages used in Igem [https://2009.igem.org/Team:Groningen/Brainstorm/Modelling]. Our [[Whitebook|whitebook]] also included several biomodeling packages that we should look at:
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| - | *[[Team:Groningen/Modeling/SynBioSS|SynBioSS]]
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| - | *[[Team:Groningen/Modeling/SimBiology|SimBiology]]
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| - | *[[Team:Groningen/Modeling/CellDesigner|CellDesigner]]
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| - | *[[Team:Groningen/Modeling/COPASI|COPASI]]
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| - | *[[Team:Groningen/Modeling/Matlab|Matlab]]
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| - | ==Modules==
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| - | We decided to build our model in the samen modules as the cloners will use. Because of the fragilety of the by stable switches these should be modeled first.
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| - | *[[Team:Groningen/Modeling/Module 1|Module 1]]
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| - | ==Parameters==
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| - | Halflife of the lasI-Lite : 4 minutes
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| - | Halflife of the lasI : <60 minutes
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Latest revision as of 15:22, 21 September 2011
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