Team:BU Wellesley Software

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<title>BU-Wellesley iGEM Team: Welcome</title>
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<p  style="text-align:center;"><a href="https://2011.igem.org/Team:BU_Wellesley_Software"><img src="http://cs.wellesley.edu/~hcilab/iGEM_wiki/images/banner.png" width="800px"></a></p>
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You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Team">Team</a></li>
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<li><a href="#">Project</a>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Project_Overview">Overview</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Clotho">Clotho</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro">G-nome Surfer Pro</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer">Optimus Primer</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet">Trumpet</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow">Puppetshow</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook">eLabNotebook</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Wet_Lab">Wet Lab</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Downloads_and_Tutorials">Downloads and Tutorials</a></li>
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<li><a href="#">Process</a>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Methodology">Methodology</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Safety">Safety</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Notebook">Notebook</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Outreach">Outreach</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Gold">Medal Fulfillment</a></li>
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<li><a href="#">Additional Info</a>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Acknowledgement">Acknowledgement</a></li>
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<li><a href="https://2011.igem.org/Team:BU_Wellesley_Software/Social">Fun</a></li>
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<H1> Project Description </H1>
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<h6>Welcome!</h6>
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Biological systems are composed of seemingly intractable sets of complex interactions.  Studying these interactions one at a time can be tedious and time consuming.  Our research introduces a recombinant method for studying these interactions more efficiently by designing custom “plasmid architectures” that allow the researcher to reconfigure different DNA parts within the plasmid.  Our specific design driver is the exploration of transcription factor interaction in tuberculosis.<br>  </P>
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<div class="intro_greeting">Hi! We are a joint software team between Boston University and Wellesley College. We have created a suite of software tools that run on a desktop interface for individual research and on a tabletop multi-touch interface for collaborative brainstorming and hypothesis forming.
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While studying biology can be intractable, managing your lab should not. Along with our custom plasmid architecture, we have developed a suite of software tools that not only automate the design process of these custom plasmids, but streamline the assembly of all DNA parts while keeping the members of the lab in sync via an electronic laboratory notebook.  By linking these tools to a central lab database, all of this information can be accessed from multiple devices and shared between lab members. We hope that these tools will promote collaboration between labs and increase productivity within the synthetic biology community.<br></P>
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Check out what we have so far on the site. More content will be coming soon!~<br></div>-->
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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Project_Overview">Project Overview</a>
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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Notebook">Notebook</a>
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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Safety">Safety</a>
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<a href="https://2011.igem.org/Team:BU_Wellesley_Software/Acknowledgement">Acknowledgments</a>
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<h3><div class="intro_greeting">Synthetic biology will require a <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Project_Overview"> multidisciplinary, collaborative design environment </a> in order to engineer the complex biological systems of the future. Our team has created a collection of software tools which address specific technical synthetic biology challenges while simultaneously advancing the way in which users interact with computing environments. Our software workflow comprises <a href="https://2011.igem.org/Team:BU_Wellesley_Software/G-nomeSurferPro"> "G-Nome Surfer Pro" </a> for research, <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Trumpet"> "Trumpet" </a> and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/OptimusPrimer"> "Optimus Primer" </a>  for design, and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Puppetshow"> "Puppetshow" </a>  and <a href="https://2011.igem.org/Team:BU_Wellesley_Software/eLabNotebook"> "eLabNotebook" </a> for the construction of those designs. In addition, we incorporated <a href="https://2011.igem.org/Team:BU_Wellesley_Software/Wet_Lab"> wetlab experimentation </a> into our project to apply these tools to create novel biological systems to investigate Tuberculosis. The combination of human computer interaction, bio-design automation, and experimental design makes our effort unique in the iGEM experience and closes the loop on the design-build-test methodology.
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!align="center"|[[Team:BU_Wellesley_Software|Home]]
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<h2>Videos</h2>
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!align="center"|[[Team:BU_Wellesley_Software/Team|Team]]
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!align="center"|[https://igem.org/Team.cgi?year=2011&team_name=BU_Wellesley_Software Official Team Profile]
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!align="center"|[[Team:BU_Wellesley_Software/Parts|Parts Submitted to the Registry]]
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<li><a href="http://www.youtube.com/watch?v=UjO7HGFZ1sQ&feature=player_embedded">Trumpet</a></li>
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!align="center"|[[Team:BU_Wellesley_Software/Modeling|Modeling]]
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  <li><a href="http://www.youtube.com/watch?v=QVR1NaciNmo">PuppetShow</a></li>
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!align="center"|[[Team:BU_Wellesley_Software/Notebook|Notebook]]
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!align="center"|[[Team:BU_Wellesley_Software/Safety|Safety]]
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!align="center"|[[Team:BU_Wellesley_Software/Attributions|Attributions]]
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Latest revision as of 17:19, 27 October 2011

BU-Wellesley iGEM Team: Welcome


Welcome!



Synthetic biology will require a multidisciplinary, collaborative design environment in order to engineer the complex biological systems of the future. Our team has created a collection of software tools which address specific technical synthetic biology challenges while simultaneously advancing the way in which users interact with computing environments. Our software workflow comprises "G-Nome Surfer Pro" for research, "Trumpet" and "Optimus Primer" for design, and "Puppetshow" and "eLabNotebook" for the construction of those designs. In addition, we incorporated wetlab experimentation into our project to apply these tools to create novel biological systems to investigate Tuberculosis. The combination of human computer interaction, bio-design automation, and experimental design makes our effort unique in the iGEM experience and closes the loop on the design-build-test methodology.

Videos







Retrieved from "http://2011.igem.org/Team:BU_Wellesley_Software"