Team:USTC-Software

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        <a href="#" rel="1">1</a>
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        <a href="#" rel="4">4</a>
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        <h1>Lachesis</h1>
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            <div class="intro_box margin_r10">
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            <h3>Team</h3>
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              <p class="intro">Our team is formed of a group of diligent students coming from various departments of USTC. In the School of Life Sciences, we devoted our perspirations to this project for nearly a year. <div class="button_01">
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<a href="https://2011.igem.org/Team:USTC-Software/team">Details</a> </div> </p> </div>           
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            <div class="intro_box margin_r10">
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            <h3>Models</h3>
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                <img src="https://static.igem.org/mediawiki/2011/c/c8/USTC_Software_image_03.jpg" alt="product" />
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              <p class="intro">Biological reaction networks, even small ones, contain a lot of species and reactions and, thus, are hard to build by hand. Our rule-based modeling approach aims at freeing human from such labor.
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<a href="https://2011.igem.org/Team:USTC-Software/documents">Details</a> </div> </p> </div>
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            <div class="intro_box margin_r10">
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            <h3>Human practice</h3>
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                <img src="https://static.igem.org/mediawiki/2011/3/3c/USTC_Software_image_04.jpg" alt="product" />
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              <p class="intro">We conducted a survey, during the National Science Week, to discover USTC students' opinion on Synthetic
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Biology.<div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/human practice">Details</a> </div> </p> </div>
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        <h2>Project</h2>
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    <img src="https://static.igem.org/mediawiki/2011/f/fd/USTC_Software_image_05.jpg" alt="image" width="363" class="fl_image" />
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    <p>
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<span lang="EN-US" xml:lang="EN-US">Our project this year is named Lachesis, which consists of the following</span>
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<br/>
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          <div><span lang="EN-US" xml:lang="EN-US">
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1.Automatic generation of biological reaction network simply from biobrick assemblys.<br/>
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2.Data exchange,Reaction network visualization.<br/>
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3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.<br/>
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4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.<br/>
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</p>
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<p class="em_text"><p class="intro"> <div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/project">Details</a> </div> </p> </p>
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<br/>
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<h2>Sponsers</h2>
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  <b> Welcome to &#160;&#160;<a href="http://en.ustc.edu.cn/" target="_blank">University of Science and Technology of China</a>&#160;! </b>
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<p><span lang="EN-US" xml:lang="EN-US">USTC 2011 DRY TEAM as a one has worked diligently on designing and implementing a user friendly and interacting-prone software which will get nearer to biology reality and free synthetic biologist from considering unnecessary minutia as well as help both layman and expert draw deep understanding of the mechanism on how the gene circuit run.</span></p>
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<div><span lang="EN-US" xml:lang="EN-US">We offer a visualizing tool which give insight into the dynamics of a biology network. User dominated parameter adjustment process is also provided to assist in getting the required behavior. In order to assess the network&rsquo;s immunology to parameter perturbation, a PCA analysis approach is exploited to depict the structure of a &ldquo;good&rdquo; behaved region.   </span>
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Latest revision as of 12:42, 27 October 2011


Team:USTC-Software - 2011.igem.org

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Lachesis

Team

product

Our team is formed of a group of diligent students coming from various departments of USTC. In the School of Life Sciences, we devoted our perspirations to this project for nearly a year.

Details

Models

product

Biological reaction networks, even small ones, contain a lot of species and reactions and, thus, are hard to build by hand. Our rule-based modeling approach aims at freeing human from such labor.

Details

Human practice

product

We conducted a survey, during the National Science Week, to discover USTC students' opinion on Synthetic Biology.

Details

Project

image

Our project this year is named Lachesis, which consists of the following

1.Automatic generation of biological reaction network simply from biobrick assemblys.
2.Data exchange,Reaction network visualization.
3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.
4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.

Details


Sponsers


Vistor



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