Team:Tokyo Tech/Projects/Urea-cooler/method

From 2011.igem.org

(Difference between revisions)
 
(16 intermediate revisions not shown)
Line 34: Line 34:
list-style: none;
list-style: none;
float: left;
float: left;
-
height: 20px;
+
height: 30px;
width: 946px;
width: 946px;
}
}
Line 55: Line 55:
display: none;
display: none;
position: absolute;
position: absolute;
-
font-size: 14px;
+
font-size: 16px;
opacity: 0.8;
opacity: 0.8;
list-style: none;
list-style: none;
Line 79: Line 79:
background-color: #EFEBEC;
background-color: #EFEBEC;
color: #000000;
color: #000000;
 +
font-size:13px;
}
}
Line 86: Line 87:
left: 0;
left: 0;
clear: both;
clear: both;
-
height: 180px;
+
height: 190px;
}
}
.main
.main
Line 106: Line 107:
h1, h2, h3, h4, h5, h6
h1, h2, h3, h4, h5, h6
{
{
-
background-color: #D09DE1;
+
background-color: #00508D;
-
color:#0D3430;
+
color:#FFFFFF;
text-align: left;
text-align: left;
}
}
Line 166: Line 167:
p
p
{
{
-
text-indent: 0.5em;
+
text-indent: 2em;
}
}
Line 215: Line 216:
}
}
-
window.onload = function() {
+
function getElementsByClass() {
 +
    var classElements = new Array();
 +
    var allElements = document.getElementsByTagName("*");
 +
    for (i = 0 ; i < allElements.length; i++) {
 +
if (allElements[i].className == 'firstHeading') {
 +
    allElements[i].style.display = 'none';
 +
  // window.alert('発見。');
 +
}
 +
    }
 +
}
 +
 +
window.onload = function() {
 +
getElementsByClass();
var menu = window.document.getElementById('TopMenu');
var menu = window.document.getElementById('TopMenu');
if(menu==null)
if(menu==null)
Line 248: Line 261:
<!-- top box -->
<!-- top box -->
<div class="top">
<div class="top">
-
<img src="https://static.igem.org/mediawiki/2011/2/24/TokyoTech_TOPlogo.png" alt="Tokyo Tech 2011" width="965px" /><br />
+
<object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,0,0" width="965" height="150" id="Yourfilename" align="">
 +
<param name="movie" value="https://static.igem.org/mediawiki/2011/4/4d/Header.swf">
 +
<param name="quality" value="high">
 +
<param name="bgcolor" value="#FFFFFF">
 +
<embed src="https://static.igem.org/mediawiki/2011/4/4d/Header.swf" quality="high" bgcolor="#FFFFFF" width="965" height="150" name="Yourfilename" align="" type="application/x-shockwave-flash" pluginspage="http://www.macromedia.com/go/getflashplayer">
 +
</embed>
 +
</object>
<!-- list of top menu -->
<!-- list of top menu -->
<div id="navigation">
<div id="navigation">
Line 255: Line 274:
<li id="menu_Project">
<li id="menu_Project">
-
Projects
+
Project
<ul>
<ul>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">RPS-game</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/RPS-game/index.htm">RPS-Game</a></li>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">rain</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/making-rain/index.htm">Make it Rain</a></li>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">urea cooler</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/index.htm">Urea Coolers</a></li>
</ul>
</ul>
</li>
</li>
Line 268: Line 287:
Modeling
Modeling
<ul>
<ul>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/RPS-game/PRS-game">RPS-game</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/RPS-game/RPS-game">RPS-Game</li>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/Urea-cooler/urea-cooler">urea cooler</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Modeling/Urea-cooler/urea-cooler">Urea Coolers</li>
</ul>
</ul>
</li>
</li>
-
<li id="menu_HumanPractice"><a href="https://2011.igem.org/Team:Tokyo_Tech/HumanPractice.htm">Human Practice</a></li>
+
<li id="menu_Human Practice"><a href="https://2011.igem.org/Team:Tokyo_Tech/HumanPractice.htm">Human Practice</a></li>
<li id="menu_Sitemap"><a href="https://2011.igem.org/Team:Tokyo_Tech/sitemap.htm">Sitemap</a></li>
<li id="menu_Sitemap"><a href="https://2011.igem.org/Team:Tokyo_Tech/sitemap.htm">Sitemap</a></li>
<li id="menu_Extra">
<li id="menu_Extra">
-
Extra
+
More
-
<ul>
+
<ul style="width:210px;">
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Safety">Safety</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Safety">Safety</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Attribution_and_Contributions.htm">Attribution and Contributions</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Attribution_and_Contributions.htm">Attribution and Contributions</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/notebook">NoteBook</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/notebook">NoteBook</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/team">Team</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/team">Team</a></li>
-
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Sponsers.htm">Sponsers</a></li>
+
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Sponsers.htm">Sponsors</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Collaboration.htm">Collaboration</a></li>
<li><a href="https://2011.igem.org/Team:Tokyo_Tech/Collaboration.htm">Collaboration</a></li>
</ul>
</ul>
Line 298: Line 317:
<!-- left menu list -->
<!-- left menu list -->
-
<div style="min-height: 3500px; float: left;">
+
<div style="min-height: 1250px; float: left;">
<div id="LeftMenu">
<div id="LeftMenu">
<!--list of page menu: DO NOT WRITE LINKS NOT WRITTEN IN THIS PAGE -->
<!--list of page menu: DO NOT WRITE LINKS NOT WRITTEN IN THIS PAGE -->
<ul>
<ul>
-
<li>
+
<li><a href="#samples">1. Preparation of samples for urea concentration assay</a></li>
-
<a href="#samples">1. Preparation of samples for urea concentration assay</a>
+
                 <li><a href="#assay">2. Urea concentration assay</a></li>
-
                </li>
+
-
                 <li>
+
-
                        <a href="#assay">2. Urea concentration assay</a>
+
-
+
-
               
+
-
</li>
+
                  
                  
</ul>
</ul>
Line 321: Line 334:
<!-- page title -->
<!-- page title -->
<h1> Urea assay method </h1>
<h1> Urea assay method </h1>
-
<h2 id="#samples">1. Preparation of samples for urea concentration assay</h2>
+
<h2 id="samples">1. Preparation of samples for urea concentration assay</h2>
<p>
<p>
<ol>
<ol>
-
         <li>A single colony of cells transformed with mock, pTrc-rocF or pTrc-rocF-Arg box was inoculated into 3mL of LB with kanamycin and grown to saturation at 37℃.</li>
+
         <li>A single colony of cells transformed with engineered plasmids (mock,<i>rocF</i> or <i>rocF</i>+Arg box) was inoculated into 3 mL of LB with appropriate antibiotics and grown to saturation at 37℃.</li>
-
         <li>The saturated culture was diluted 50-fold, grown till the log phase (OD600 = 0.5).</li>
+
         <li>The saturated culture was diluted 50-fold, grown till the log phase (OD<sub>600</sub> = 0.5).</li>
-
         <li>The culture was induced with 1mM IPTG at 37℃ for 1 hour. </li>
+
         <li>The culture was induced with 1 mM IPTG at 37℃ for 1 hour. </li>
-
         <li>2mL of culture was centrifuged at 9,000 rmp for 1 minute and the supernatant fluid was used as a sample for urea concentration assay. </li>
+
         <li>1.5 mL of culture was centrifuged at 9,000 rpm for 1 minute and the supernatant fluid was used as a sample for urea concentration assay. </li>
         </ol>
         </ol>
</p>
</p>
-
<h2 id="#assay">2. Urea concentration assay</h2>
+
<h2 id="assay">2. Urea concentration assay</h2>
<p>Urea concentrations of the samples were determined colorimetrically with <a href="http://www.clonagen.com/clonagen/ab52e63f-4e38-4465-b325-5fd126415f1a/quantichrom_urea_assay_kit_product.aspx">DIUR-500 -QuantiChrom™ Urea Assay Kit obtained from BioAssay Systems</a>.<br />
<p>Urea concentrations of the samples were determined colorimetrically with <a href="http://www.clonagen.com/clonagen/ab52e63f-4e38-4465-b325-5fd126415f1a/quantichrom_urea_assay_kit_product.aspx">DIUR-500 -QuantiChrom™ Urea Assay Kit obtained from BioAssay Systems</a>.<br />
-
Each sample was assayed in triplicate.
+
Detailed methods are as follows.
<ol>
<ol>
-
         <li>10 µL of the supernatant fluid from each sample, 10 µL blank(LB),and 10 µL standard (10 mg/dL urea LB) were transferred to wells of clear bottom 96-well plates. </li>
+
         <li>10 &micro;L of the supernatant fluid from each sample, 10 &micro;L blank(LB),and 10 &micro;L standard (10 mg/dL urea LB) were transferred to wells of clear bottom 96-well plates. </li>
-
         <li>200 µL working reagent for coloring reaction from DIUR-500 -QuantiChrom™ Urea Assay Kit was added and the wells were taped lightly to mix.</li>
+
         <li>200 &micro;L working reagent for coloring reaction from DIUR-500 -QuantiChrom™ Urea Assay Kit was added and the wells were taped lightly to mix.</li>
-
         <li>Optical density at 450nm was read and urea concentration (mg/dL) of the sample was calculated as<br />
+
      <li>The mixture was incubated for 20 munites at room temperature.</li>
 +
         <li>Optical density at 450 nm was read and urea concentration (mg/dL) of the sample was calculated as<br />
  <img src="https://static.igem.org/mediawiki/2011/5/55/Kit_equation.png" alt="equation" />.<br />
  <img src="https://static.igem.org/mediawiki/2011/5/55/Kit_equation.png" alt="equation" />.<br />
-
ODSAMPLE, ODBLANK and ODSTANDARD are OD450 values of sample, standard and blank, respectively. </li>
+
ODSAMPLE, ODBLANK and ODSTANDARD are OD<sub>450</sub> values of sample, standard and blank, respectively. </li>
          
          
         </ol>
         </ol>
Line 345: Line 359:
</p>
</p>
-
<h5 id="Overall1">Standard curve for coloring reaction in urea assay</h4>
+
<h4 id="Overall1">Standard curve for coloring reaction in urea assay</h4>
-
<p>To generate standard curve, 0, 0.5, 1.0, 2.5, 7.5, 10mg/dL urea LB were assayed in triplicate in the same way as the samples. Standard curve is shown in Fig.1.<br />
+
<p>To generate standard curve, 0, 0.5, 1.0, 2.5, 7.5, 10 mg/dL urea LB were assayed in triplicate in the same way as the samples. Standard curve is shown in Fig.1.<br />
-
<img src="https://static.igem.org/mediawiki/2011/9/9c/Standard_curve.png" alt="Standard curve for coloring reaction in urea assay" "width="200px" /> <br />  
+
<img src="https://static.igem.org/mediawiki/2011/9/9c/Standard_curve.png" alt="Standard curve for coloring reaction in urea assay" width="400px" /> <br />  
Fig.1 Standard curve for coloring reaction in urea assay
Fig.1 Standard curve for coloring reaction in urea assay
 
 

Latest revision as of 03:17, 27 October 2011

Tokyo Tech 2011

Urea assay method

1. Preparation of samples for urea concentration assay

  1. A single colony of cells transformed with engineered plasmids (mock,rocF or rocF+Arg box) was inoculated into 3 mL of LB with appropriate antibiotics and grown to saturation at 37℃.
  2. The saturated culture was diluted 50-fold, grown till the log phase (OD600 = 0.5).
  3. The culture was induced with 1 mM IPTG at 37℃ for 1 hour.
  4. 1.5 mL of culture was centrifuged at 9,000 rpm for 1 minute and the supernatant fluid was used as a sample for urea concentration assay.

2. Urea concentration assay

Urea concentrations of the samples were determined colorimetrically with DIUR-500 -QuantiChrom™ Urea Assay Kit obtained from BioAssay Systems.
Detailed methods are as follows.

  1. 10 µL of the supernatant fluid from each sample, 10 µL blank(LB),and 10 µL standard (10 mg/dL urea LB) were transferred to wells of clear bottom 96-well plates.
  2. 200 µL working reagent for coloring reaction from DIUR-500 -QuantiChrom™ Urea Assay Kit was added and the wells were taped lightly to mix.
  3. The mixture was incubated for 20 munites at room temperature.
  4. Optical density at 450 nm was read and urea concentration (mg/dL) of the sample was calculated as
    equation.
    ODSAMPLE, ODBLANK and ODSTANDARD are OD450 values of sample, standard and blank, respectively.

Standard curve for coloring reaction in urea assay

To generate standard curve, 0, 0.5, 1.0, 2.5, 7.5, 10 mg/dL urea LB were assayed in triplicate in the same way as the samples. Standard curve is shown in Fig.1.
Standard curve for coloring reaction in urea assay
Fig.1 Standard curve for coloring reaction in urea assay

Retrieved from "http://2011.igem.org/Team:Tokyo_Tech/Projects/Urea-cooler/method"