Team:USTC-Software

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            <h1><img src="https://static.igem.org/mediawiki/2011/b/b8/USTC_Software_iGEM_logo.jpg" alt="iGEM" width="173" height="150" /> </br> </br> USTC-Software </h1>
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                                <li><a href="https://2011.igem.org/Team:USTC-Software/aview">Assembly View</a></li>
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                                <li><a href="https://2011.igem.org/Team:USTC-Software/nview">Network View</a></li>                     
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                                <li><a href="https://2011.igem.org/Team:USTC-Software/tech&algo">Technology & Algorithm</a></li>
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                <li><a href="https://2011.igem.org/Team:USTC-Software/notebook">Notebook</a></li>
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    <li><a href="https://2011.igem.org/Team:USTC-Software/meetup">meetup</a></li>
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<li><a class="last" href="https://2011.igem.org/Team:USTC-Software/download">Download</a></li>
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        <h3>What is iGEM?</h3>
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<p>The International Genetically Engineered Machine competition (iGEM) is the premiere undergraduate Synthetic Biology competition. Student teams are given a kit of biological parts at the beginning of the summer from the Registry of Standard Biological Parts. Working at their own schools over the summer, they use these parts and new parts of their own design to build biological systems and operate them in living cells. This project design and competition format is an exceptionally motivating and effective teaching method.</p>
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                  <a href="https://igem.org/About">Read more...</a> 
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                <h3>What is Project Lachesis?</h3>
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<p>The project Lachesis aims at providing and integrated, easy-using and extensible CAD environment for the general purpose of Synthetic Biology, it adopts an plug-in based structure.We provide three categories of plug-ins:Document parsers that handles various types of files, such as SBML andMoDeL. Models that each represents a specific kind of synthetic biological
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model. Views that present graphical user interface for users to work with biological models.</p>
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        <a href="#" rel="1">1</a>
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                  <a href="https://2011.igem.org/Team:USTC-Software/project">Read more...</a> 
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        <a href="#" rel="2">2</a>
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        <a href="#" rel="6">6</a>
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                <h3>Where are we from?</h3>
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<p>The University of Science and Technology of China (USTC) is under the jurisdiction of the Chinese Academy of Sciences (CAS).
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                As a key university of the nation, it is noted for its advanced science and high technology programs, unique management studies and well-tailored disciplines in the humanities.
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                On May 11, the Nature Publishing Group released Nature Publishing Index 2010 China, remarking "a dramatic rise in the quality of research being published by China". University of Science and Technology of China is ranked 3rd of TOP 10 Institutions in Index 2010 China.
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  <a href="http://en.ustc.edu.cn/about/">Read more...</a>
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<br/><br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/>  <br/> <br/> <br/>
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         <h1>Lachesis</h1>
         <h1>Lachesis</h1>
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               <p class="intro">Nothing gets done by itself so we formed a group of tireless and diligent students came from different faculties (all parts of USTC) and joined our forces at School of Life Sciences. <div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/team">Details</a> </div> </p> </div>
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               <p class="intro">Our team is formed of a group of diligent students coming from various departments of USTC. In the School of Life Sciences, we devoted our perspirations to this project for nearly a year. <div class="button_01">  
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<a href="https://2011.igem.org/Team:USTC-Software/team">Details</a> </div> </p> </div>          
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            <h3>MoDeL</h3>
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            <h3>Models</h3>
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               <p class="intro">Biological reaction networks, even small ones, contain a lot of species and reactions and, thus, are hard to build by hand. Our rule-based modeling approach aims at freeing human from such labor.
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               <p class="intro">Sorry... <div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/model">Details</a> </div> </p> </div>
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<a href="https://2011.igem.org/Team:USTC-Software/documents">Details</a> </div> </p> </div>
              
              
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               <p class="intro">A survey was conducted during the national science week in the school campus of USTC, where students were asked a few basic questions to discover their opinions on synthetic biology.<div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/human practice">Details</a> </div> </p> </div>
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               <p class="intro">We conducted a survey, during the National Science Week, to discover USTC students' opinion on Synthetic
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Biology.<div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/human practice">Details</a> </div> </p> </div>
              
              
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         <h2>Project</h2>
         <h2>Project</h2>
          
          
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     <p><span lang="EN-US" xml:lang="EN-US">USTC 2011 Dry Team has worked on a software named Lanchesis.</span></p>
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<span lang="EN-US" xml:lang="EN-US">Our project this year is named Lachesis, which consists of the following</span>
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<p>It is a software mainly worked on:</p>
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<P>1、Automatically generating the regulation network simply according to the assembly constructed by users</P>
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<p>2、Geting the parameter space of a Biology Network which make the Network have the predict behaviour.</p>
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<p>3、Evaluating the sensitivity of a Biology Network using PCA analysis.</p>
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1.Automatic generation of biological reaction network simply from biobrick assemblys.<br/>
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<p>4、Making Biology Network easy to see by visualing the network in three windows.Network View,Behaviour View and Reaction View.</p>   </span></div>
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2.Data exchange,Reaction network visualization.<br/>
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3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.<br/>
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4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.<br/>
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<p class="em_text"><p class="intro"> <div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/project">Details</a> </div> </p> </p>
<p class="em_text"><p class="intro"> <div class="button_01"> <a href="https://2011.igem.org/Team:USTC-Software/project">Details</a> </div> </p> </p>
          
          
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<h2>Sponsers</h2>
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  <td width="363" height="81"><h2>Sponsor</h2></td>
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            <td width="227"><img src="https://static.igem.org/mediawiki/2011/1/11/USTC_Software_TAO_LOGO.png"  width="238" height="83"/></td>
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            <td width="234"><img src="https://static.igem.org/mediawiki/2011/d/d3/USTC_Software_sols.png" width="238" height="83"/></td>
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            <td height="86"><img src="https://static.igem.org/mediawiki/2011/1/18/USTC_Software_information.png"  width="238" height="83"/></td>
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            <td><img src="https://static.igem.org/mediawiki/2011/2/25/USTC_Software_chemistry.jpg"  width="238" height="83"/></td>
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  <a href="http://www.ustcif.org"> <img src="https://static.igem.org/mediawiki/2011/b/ba/USTC_Software_IF_LOGO.jpg" width="363" height="90"/></a> </td>
 
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  <td width="358"><p align="center"><a href="http://www.ustcif.org"><strong>Initiative Foundation, USTC</strong></a></p></td>
 
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Latest revision as of 12:42, 27 October 2011


Team:USTC-Software - 2011.igem.org

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Lachesis

Team

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Our team is formed of a group of diligent students coming from various departments of USTC. In the School of Life Sciences, we devoted our perspirations to this project for nearly a year.

Details

Models

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Biological reaction networks, even small ones, contain a lot of species and reactions and, thus, are hard to build by hand. Our rule-based modeling approach aims at freeing human from such labor.

Details

Human practice

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We conducted a survey, during the National Science Week, to discover USTC students' opinion on Synthetic Biology.

Details

Project

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Our project this year is named Lachesis, which consists of the following

1.Automatic generation of biological reaction network simply from biobrick assemblys.
2.Data exchange,Reaction network visualization.
3.Automatic parameter fitting of a mathematical model for a desired behavior, according to experiment data or hand drawn curves using evolution algorithm.
4.Evaluation of the workablility or robustness of a biological reaction network using pca and entropy.

Details


Sponsers


Vistor



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