Team:Calgary/Project/References

From 2011.igem.org

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<ul>
<ul>
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<li>Gopinath, A.V. and Russell, D. 2005. An Inexpensive Field-Portable Programmable Potentiostat. 2006. Chem. Educator 11, 23-28.</li>
+
<li>Biran, I. et al. 1999. On-line monitoring of gene expression. Microbiology, 145. pp. 2129-2133</li>
 +
<li>Biran, I. et al. 2000. Online and in situ monitoring of environmental pollutants: electrochemical biosensing of cadmium. Environmental Microbiology 2 (3). pp. 285-290
 +
<li>Del Rio, L.F. et al. 2006. Degradation of naphthenic acids by sediment micro-organisms. Journal of Applied Microbiology 101. pp. 1049-1061
 +
<li>Dokhoyan VK, Magomedov AK (1984) Effects of sodium naphthenate on survival and some physiological-biochemical parameters of some fishes. J Ichthyol 23:125-132</li>
-
<li>Robertson, A. MacG. 2000. International Experience in Tailing Pond Remediation. Wismut Tagungsband Internationale Konferesnz 11, Schlema, Germany. July 14, 2000. Accessed August 16, 2011 via: <a href="http://www.robertsongeoconsultants.com/publications/amrpaper.pdf">http://www.robertsongeoconsultants.com/publications/amrpaper.pdf</a>.</li>
 
 +
<li>Energy Resources Conservation Board. Directive 074 ERCB (Website). February 3, 2009. Accessed: August 16, 2011. <a href="http://www.ercb.ca/docs/Documents/directives/Directive074.pdf">http://www.ercb.ca/docs/Documents/directives/Directive074.pdf</a>.</li>
 +
<li>Frank, R.A. et al. 2008. Effect of carboxylic acid content on the acute toxicity of oil sands naphthenic acids. Environmental Science and Technology 43 (2). pp. 266-271
 +
<li>Feng, S., Xue, L., Liu, H., & Lu, P. 2009. Improvement of efficiency of genetic transformation for dunaliella salina by glass beads method. Molecular Biology Reports, 36(6), 1433-1439.</li>
 +
 +
<li>Gopinath, A.V. and Russell, D. 2005. An Inexpensive Field-Portable Programmable Potentiostat. 2006. Chem. Educator 11. pp. 23-28. <a href="https://static.igem.org/mediawiki/2011/e/e7/Calgary2011_potentiostat.pdf">Click here to read.</a></li>
<li>Government of Alberta – Alberta Environment. Tailings. Alberta Environment (Website). Accessed: August 16, 2011. <a href="http://www.environment.alberta.ca/02011.html">http://www.environment.alberta.ca/02011.html</a>.</li>
<li>Government of Alberta – Alberta Environment. Tailings. Alberta Environment (Website). Accessed: August 16, 2011. <a href="http://www.environment.alberta.ca/02011.html">http://www.environment.alberta.ca/02011.html</a>.</li>
<li>Government of Alberta. Alberta’s Oil Sands – Reclamation. Government of Alberta (Website). Accessed: August 16, 2011. <a href="http://oilsands.alberta.ca/reclamation.html">http://oilsands.alberta.ca/reclamation.html</a>.</li>
<li>Government of Alberta. Alberta’s Oil Sands – Reclamation. Government of Alberta (Website). Accessed: August 16, 2011. <a href="http://oilsands.alberta.ca/reclamation.html">http://oilsands.alberta.ca/reclamation.html</a>.</li>
-
<li>Munir, N. Jivraj, M. MacKinnon and B. Fung. October, 1995. Naphthenic Acid Extraction and Quantitative Analysis with FT-IR Spectroscopy. Syncrude Edmonton Research Center.</li>
+
<li>Government of Alberta - Alberta Environment. Alberta’s user guide for waste managers. Alberta Environment (Website). 1996. Accessed: July 20, 2011. <a href="http://www.environment.alberta.ca/2452.html">http://www.environment.alberta.ca/2452.html</a>.</li>
-
<li>Gillian McEachern, Environmental Defence. Environmental Defence Submission to Environment Canada on Naphthenic Acids in the Tar Sands. November 11, 2010. Accessed: July 21, 2011. <a href="http://environmentaldefence.ca/reports/environmental-defence-submission-environment-canada-naphthenic-acids-tar-sands">http://environmentaldefence.ca/reports/environmental-defence-submission-environment-canada-naphthenic-acids-tar-sands</a>.</li>
 
<li>Government of Canada - Department of Justice. Canadian Environmental Protection Act, 1999 (S.C. 1999, c. 33). Government of Canada (Website). 2000. Accessed: July 20, 2011. <a href="http://laws-lois.justice.gc.ca/eng/acts/C-15.31/">http://laws-lois.justice.gc.ca/eng/acts/C-15.31/</a>.</li>
<li>Government of Canada - Department of Justice. Canadian Environmental Protection Act, 1999 (S.C. 1999, c. 33). Government of Canada (Website). 2000. Accessed: July 20, 2011. <a href="http://laws-lois.justice.gc.ca/eng/acts/C-15.31/">http://laws-lois.justice.gc.ca/eng/acts/C-15.31/</a>.</li>
-
<li>Ian Shugart, Environment Canada. Memorandum to the Minister: Oil Sands Tailings Ponds. MIN-118731. Revised: January 19, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. <a href="http://www.cec.org/Storage/83/8361_ASUB-II.pdf">http://www.cec.org/Storage/83/8361_ASUB-II.pdf</a>.</li>
 
<li>Government of Canada - Environment Canada. A Guide to Understanding the Canadian Environmental Protection Act, 1999. Environment Canada (Website). December 10, 2004. Accessed: July 15, 2011. <a href="http://www.ec.gc.ca/lcpe-cepa/default.asp?lang=En&n=E00B5BD8-1">http://www.ec.gc.ca/lcpe-cepa/default.asp?lang=En&n=E00B5BD8-1</a>.</li>
<li>Government of Canada - Environment Canada. A Guide to Understanding the Canadian Environmental Protection Act, 1999. Environment Canada (Website). December 10, 2004. Accessed: July 15, 2011. <a href="http://www.ec.gc.ca/lcpe-cepa/default.asp?lang=En&n=E00B5BD8-1">http://www.ec.gc.ca/lcpe-cepa/default.asp?lang=En&n=E00B5BD8-1</a>.</li>
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<li>Government of Canada. Government Notices, Department of the Environment, Canadian Environmental Protection Act, 1999. Canada Gazette. Vol. 145 - No. 27. July 2, 2011. Accessed: July 20, 2011. <a href="http://www.gazette.gc.ca/rp-pr/p1/2011/2011-07-02/html/notice-avis-eng.html#d101">http://www.gazette.gc.ca/rp-pr/p1/2011/2011-07-02/html/notice-avis-eng.html#d101</a>.</li>
<li>Government of Canada. Government Notices, Department of the Environment, Canadian Environmental Protection Act, 1999. Canada Gazette. Vol. 145 - No. 27. July 2, 2011. Accessed: July 20, 2011. <a href="http://www.gazette.gc.ca/rp-pr/p1/2011/2011-07-02/html/notice-avis-eng.html#d101">http://www.gazette.gc.ca/rp-pr/p1/2011/2011-07-02/html/notice-avis-eng.html#d101</a>.</li>
-
<li>Government of Alberta - Alberta Environment. Alberta’s user guide for waste managers. Alberta Environment (Website). 1996. Accessed: July 20, 2011. <a href="http://www.environment.alberta.ca/2452.html">http://www.environment.alberta.ca/2452.html</a>.</li>
 
-
 
-
<li>Singh, K., Regional Approvals Manager, Northern Region, Alberta Environment. Follow-up on Committee Hearings. Standing Committee on the Environment and Sustainable Development. March 20, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. <a href="http://www.cec.org/Storage/84/8362_ASUB-III.pdf">http://www.cec.org/Storage/84/8362_ASUB-III.pdf</a>.</li>
 
<li>Government of Canada - Department of Justice. New Substances Notification Regulations (Organisms), SOR/2005-248. Department of Justice (Website). Updated: July 11, 2011. Accessed: July 20, 2011. <a href="http://laws.justice.gc.ca/eng/regulations/SOR-2005-248/page-8.html">http://laws.justice.gc.ca/eng/regulations/SOR-2005-248/page-8.html</a>.</li>
<li>Government of Canada - Department of Justice. New Substances Notification Regulations (Organisms), SOR/2005-248. Department of Justice (Website). Updated: July 11, 2011. Accessed: July 20, 2011. <a href="http://laws.justice.gc.ca/eng/regulations/SOR-2005-248/page-8.html">http://laws.justice.gc.ca/eng/regulations/SOR-2005-248/page-8.html</a>.</li>
-
<li>Energy Resources Conservation Board. Directive 074 ERCB (Website). February 3, 2009. Accessed: August 16, 2011. <a href="http://www.ercb.ca/docs/Documents/directives/Directive074.pdf">http://www.ercb.ca/docs/Documents/directives/Directive074.pdf</a>.</li>
 
 +
<li>Kang, Y. et al. 2008. The Pseudomonas aeruginosa PsrA responds to long-chain fatty acid signals to regulate the fadBA5 Beta-oxidation operon. Microbiology 154. pp. 1584-1598
 +
<li>Kang, Y., Norris, M. H., Barrett, A. R., Wilcox, B. A., & Hoang, T. T. 2009. Engineering of tellurite-resistant genetic tools for single-copy chromosomal analysis of burkholderia spp. and characterization of the burkholderia thailandensis betBA operon. Applied and Environmental Microbiology, 75(12), 4015-4027. </li>
 +
<li>Kang, Y., Norris, M. H., Wilcox, B. A., Tuanyok, A., Keim, P. S., & Hoang, T. T. 2011. Knockout and pullout recombineering for naturally transformable burkholderia thailandensis and burkholderia pseudomallei. Nature Protocols, 6(8), 1085-1104.
 +
<li>Khan, I.U.H. et al. 2004. Real-time PCR assays for genus-specific detection and quantification of culturable and non-culturable mycobacteria and pseudomonads in metalworking fluids. Molecular and Cellular Probes, 18. pp. 67-73
<li>Leung, S. S., MacKinnon, M. D., and Smith, R. E. H. 2003. The ecological effects of naphthenic acids and salt on phytoplankton from the Athabasca Oil Sands region. Aquat. Toxicol. 62:11–26.</li>
<li>Leung, S. S., MacKinnon, M. D., and Smith, R. E. H. 2003. The ecological effects of naphthenic acids and salt on phytoplankton from the Athabasca Oil Sands region. Aquat. Toxicol. 62:11–26.</li>
 +
 +
<li>Lorenzo, V. de 1994. Designing microbial systems for gene expression in the field. TIBTECH 12. pp. 365-371
 +
<li>Mason, C. B., Bricker, T. M., & Moroney, J. V. 2006. A rapid method for chloroplast isolation from the green alga chlamydomonas reinhardtii. Nature Protocols, 1(5), 2227-2230.</li>
 +
 +
<li>Miyamoto-Shinohara, et al. 2007. Survival of freeze-dried bacteria. Journal of Genetically Applied Microbiology, 54. pp. 9-24
 +
<li>McEachern, G. Environmental Defence. Environmental Defence Submission to Environment Canada on Naphthenic Acids in the Tar Sands. November 11, 2010. Accessed: July 21, 2011. <a href="http://environmentaldefence.ca/reports/environmental-defence-submission-environment-canada-naphthenic-acids-tar-sands">http://environmentaldefence.ca/reports/environmental-defence-submission-environment-canada-naphthenic-acids-tar-sands</a>.</li>
 +
 +
 +
<li>Morgan, C.A. et al. 2006. Preservation of micro-organisms by drying; A review. Journal of Microbiological Methods, 66. pp. 183-193
 +
<li>Robertson, A. MacG. 2000. International Experience in Tailing Pond Remediation. Wismut Tagungsband Internationale Konferesnz 11, Schlema, Germany. July 14, 2000. Accessed August 16, 2011 via: <a href="http://www.robertsongeoconsultants.com/publications/amrpaper.pdf">http://www.robertsongeoconsultants.com/publications/amrpaper.pdf</a>.</li>
 +
 +
<li>Munir, N. Jivraj, M. MacKinnon and B. Fung. October, 1995. Naphthenic Acid Extraction and Quantitative Analysis with FT-IR Spectroscopy.  Syncrude Edmonton Research Center.</li>
 +
<li>Norris, M. H., Kang, Y., Lu, D., Wilcox, B. A., & Hoang, T. T. 2009. Glyphosate resistance as a novel select-agent-compliant, non-antibiotic-selectable marker in chromosomal mutagenesis of the essential genes asd and dapB of burkholderia pseudomallei. Applied and Environmental Microbiology, 75(19), 6062-6075. </li>
 +
<li>Norris, M. H., Kang, Y., Wilcox, B., & Hoang, T. T. 2010. Stable, site-specific fluorescent tagging constructs optimized for burkholderia species. Applied and Environmental Microbiology, 76(22), 7635-7640. </li>
 +
<li>Skoog, West, & Holler. 1992. Fundamentals of Analytical Chemistry, Sixth edition. Saunders College Publishing.</li>
 +
<li>Shin, H.J., Park, H.H., & Lim, W.K. 2005. Freeze-dried recombinant bacteria for on-site detection of phenolic compounds by color change. Journal of Biotechnology, 119(1), 36-43.</li>
 +
 +
 +
<li> Shugart, I. Environment Canada. Memorandum to the Minister: Oil Sands Tailings Ponds. MIN-118731. Revised: January 19, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. <a href="http://www.cec.org/Storage/83/8361_ASUB-II.pdf">http://www.cec.org/Storage/83/8361_ASUB-II.pdf</a>.</li>
 +
<li>Singh, K., Regional Approvals Manager, Northern Region, Alberta Environment. Follow-up on Committee Hearings. Standing Committee on the Environment and Sustainable Development. March 20, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. <a href="http://www.cec.org/Storage/84/8362_ASUB-III.pdf">http://www.cec.org/Storage/84/8362_ASUB-III.pdf</a>.</li>
 +
 +
<li>Stover, et al. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature, 406 (31). pp. 959-964
 +
<li>Trevors, J.T. et al. 1984. A rapid method for the isolation of plasmid DNA from bacteria.  Biotechnology Letters, 6 (7). pp. 457-460
 +
 +
<li>Whitby, C. 2010. Microbial Naphthenic Acid Degradation. Advances in Applied Microbiology 70. pp. 93-125
 +
 +
 +
<li>Wutor, V.C. et al. 2007.  A novel biosensor for the detection and monitoring of β-d-galactosidase of faecal origin in water. Enzyme and Microbial Technology, 40 (6). pp. 1512-1517. <a href="https://static.igem.org/mediawiki/2011/e/e7/Calgary2011_cprbiosensor.pdf">Click here to read.</a></li>
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Latest revision as of 04:01, 29 October 2011


References

Here are the references used in the course of our project. They can be found cited throughout our website.


  • Biran, I. et al. 1999. On-line monitoring of gene expression. Microbiology, 145. pp. 2129-2133
  • Biran, I. et al. 2000. Online and in situ monitoring of environmental pollutants: electrochemical biosensing of cadmium. Environmental Microbiology 2 (3). pp. 285-290
  • Del Rio, L.F. et al. 2006. Degradation of naphthenic acids by sediment micro-organisms. Journal of Applied Microbiology 101. pp. 1049-1061
  • Dokhoyan VK, Magomedov AK (1984) Effects of sodium naphthenate on survival and some physiological-biochemical parameters of some fishes. J Ichthyol 23:125-132
  • Energy Resources Conservation Board. Directive 074 ERCB (Website). February 3, 2009. Accessed: August 16, 2011. http://www.ercb.ca/docs/Documents/directives/Directive074.pdf.
  • Frank, R.A. et al. 2008. Effect of carboxylic acid content on the acute toxicity of oil sands naphthenic acids. Environmental Science and Technology 43 (2). pp. 266-271
  • Feng, S., Xue, L., Liu, H., & Lu, P. 2009. Improvement of efficiency of genetic transformation for dunaliella salina by glass beads method. Molecular Biology Reports, 36(6), 1433-1439.
  • Gopinath, A.V. and Russell, D. 2005. An Inexpensive Field-Portable Programmable Potentiostat. 2006. Chem. Educator 11. pp. 23-28. Click here to read.
  • Government of Alberta – Alberta Environment. Tailings. Alberta Environment (Website). Accessed: August 16, 2011. http://www.environment.alberta.ca/02011.html.
  • Government of Alberta. Alberta’s Oil Sands – Reclamation. Government of Alberta (Website). Accessed: August 16, 2011. http://oilsands.alberta.ca/reclamation.html.
  • Government of Alberta - Alberta Environment. Alberta’s user guide for waste managers. Alberta Environment (Website). 1996. Accessed: July 20, 2011. http://www.environment.alberta.ca/2452.html.
  • Government of Canada - Department of Justice. Canadian Environmental Protection Act, 1999 (S.C. 1999, c. 33). Government of Canada (Website). 2000. Accessed: July 20, 2011. http://laws-lois.justice.gc.ca/eng/acts/C-15.31/.
  • Government of Canada - Environment Canada. A Guide to Understanding the Canadian Environmental Protection Act, 1999. Environment Canada (Website). December 10, 2004. Accessed: July 15, 2011. http://www.ec.gc.ca/lcpe-cepa/default.asp?lang=En&n=E00B5BD8-1.
  • Government of Canada - Environment Canada. Frequently Asked Questions about the National Pollutant Release Inventory (NPRI). Government of Canada (Website). Last Modified: July 11, 2011. Accessed: August 20, 2011. http://www.ec.gc.ca/inrp-npri/default.asp?lang=en&n=D874F870-1#ws7786DB31.
  • Government of Canada - Environment Canada. List of Organisms on the Domestic Substances List (DSL). Environment Canada (Website). Updated: April 4, 2011. Accessed: July 20, 2011. http://www.ec.gc.ca/subsnouvelles-newsubs/default.asp?lang=En&n=C4E09AE7-1.
  • Government of Canada. Government Notices, Department of the Environment, Canadian Environmental Protection Act, 1999. Canada Gazette. Vol. 145 - No. 27. July 2, 2011. Accessed: July 20, 2011. http://www.gazette.gc.ca/rp-pr/p1/2011/2011-07-02/html/notice-avis-eng.html#d101.
  • Government of Canada - Department of Justice. New Substances Notification Regulations (Organisms), SOR/2005-248. Department of Justice (Website). Updated: July 11, 2011. Accessed: July 20, 2011. http://laws.justice.gc.ca/eng/regulations/SOR-2005-248/page-8.html.
  • Kang, Y. et al. 2008. The Pseudomonas aeruginosa PsrA responds to long-chain fatty acid signals to regulate the fadBA5 Beta-oxidation operon. Microbiology 154. pp. 1584-1598
  • Kang, Y., Norris, M. H., Barrett, A. R., Wilcox, B. A., & Hoang, T. T. 2009. Engineering of tellurite-resistant genetic tools for single-copy chromosomal analysis of burkholderia spp. and characterization of the burkholderia thailandensis betBA operon. Applied and Environmental Microbiology, 75(12), 4015-4027.
  • Kang, Y., Norris, M. H., Wilcox, B. A., Tuanyok, A., Keim, P. S., & Hoang, T. T. 2011. Knockout and pullout recombineering for naturally transformable burkholderia thailandensis and burkholderia pseudomallei. Nature Protocols, 6(8), 1085-1104.
  • Khan, I.U.H. et al. 2004. Real-time PCR assays for genus-specific detection and quantification of culturable and non-culturable mycobacteria and pseudomonads in metalworking fluids. Molecular and Cellular Probes, 18. pp. 67-73
  • Leung, S. S., MacKinnon, M. D., and Smith, R. E. H. 2003. The ecological effects of naphthenic acids and salt on phytoplankton from the Athabasca Oil Sands region. Aquat. Toxicol. 62:11–26.
  • Lorenzo, V. de 1994. Designing microbial systems for gene expression in the field. TIBTECH 12. pp. 365-371
  • Mason, C. B., Bricker, T. M., & Moroney, J. V. 2006. A rapid method for chloroplast isolation from the green alga chlamydomonas reinhardtii. Nature Protocols, 1(5), 2227-2230.
  • Miyamoto-Shinohara, et al. 2007. Survival of freeze-dried bacteria. Journal of Genetically Applied Microbiology, 54. pp. 9-24
  • McEachern, G. Environmental Defence. Environmental Defence Submission to Environment Canada on Naphthenic Acids in the Tar Sands. November 11, 2010. Accessed: July 21, 2011. http://environmentaldefence.ca/reports/environmental-defence-submission-environment-canada-naphthenic-acids-tar-sands.
  • Morgan, C.A. et al. 2006. Preservation of micro-organisms by drying; A review. Journal of Microbiological Methods, 66. pp. 183-193
  • Robertson, A. MacG. 2000. International Experience in Tailing Pond Remediation. Wismut Tagungsband Internationale Konferesnz 11, Schlema, Germany. July 14, 2000. Accessed August 16, 2011 via: http://www.robertsongeoconsultants.com/publications/amrpaper.pdf.
  • Munir, N. Jivraj, M. MacKinnon and B. Fung. October, 1995. Naphthenic Acid Extraction and Quantitative Analysis with FT-IR Spectroscopy. Syncrude Edmonton Research Center.
  • Norris, M. H., Kang, Y., Lu, D., Wilcox, B. A., & Hoang, T. T. 2009. Glyphosate resistance as a novel select-agent-compliant, non-antibiotic-selectable marker in chromosomal mutagenesis of the essential genes asd and dapB of burkholderia pseudomallei. Applied and Environmental Microbiology, 75(19), 6062-6075.
  • Norris, M. H., Kang, Y., Wilcox, B., & Hoang, T. T. 2010. Stable, site-specific fluorescent tagging constructs optimized for burkholderia species. Applied and Environmental Microbiology, 76(22), 7635-7640.
  • Skoog, West, & Holler. 1992. Fundamentals of Analytical Chemistry, Sixth edition. Saunders College Publishing.
  • Shin, H.J., Park, H.H., & Lim, W.K. 2005. Freeze-dried recombinant bacteria for on-site detection of phenolic compounds by color change. Journal of Biotechnology, 119(1), 36-43.
  • Shugart, I. Environment Canada. Memorandum to the Minister: Oil Sands Tailings Ponds. MIN-118731. Revised: January 19, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. http://www.cec.org/Storage/83/8361_ASUB-II.pdf.
  • Singh, K., Regional Approvals Manager, Northern Region, Alberta Environment. Follow-up on Committee Hearings. Standing Committee on the Environment and Sustainable Development. March 20, 2009. Document released under the Access to Information Act. Accessed: August 20, 2011. http://www.cec.org/Storage/84/8362_ASUB-III.pdf.
  • Stover, et al. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature, 406 (31). pp. 959-964
  • Trevors, J.T. et al. 1984. A rapid method for the isolation of plasmid DNA from bacteria. Biotechnology Letters, 6 (7). pp. 457-460
  • Whitby, C. 2010. Microbial Naphthenic Acid Degradation. Advances in Applied Microbiology 70. pp. 93-125
  • Wutor, V.C. et al. 2007. A novel biosensor for the detection and monitoring of β-d-galactosidase of faecal origin in water. Enzyme and Microbial Technology, 40 (6). pp. 1512-1517. Click here to read.

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