Template:Team:UC Davis/MutantWidget

From 2011.igem.org

(Difference between revisions)
 
(39 intermediate revisions not shown)
Line 4: Line 4:
<script>
<script>
//Painstakingly coded by Keegan Owsley. Feel free to use it, but it might burn your house down.
//Painstakingly coded by Keegan Owsley. Feel free to use it, but it might burn your house down.
 +
 +
function rerender()
 +
{
 +
 +
            camera.position.x = 250*Math.cos(theta);
 +
    camera.position.y = 250*Math.sin(theta);
 +
            if(phi < Math.PI/2)
 +
            {
 +
                phi = Math.PI/2;
 +
            }
 +
            if(phi > 3*Math.PI/4)
 +
            {
 +
                phi = 3*Math.PI/4;
 +
            }
 +
            camera.position.z = -250*Math.cos(phi);
 +
zaxislabel.rotation.y = Math.PI/2 - Math.atan2((zaxislabel.position.y-camera.position.y),(zaxislabel.position.x-camera.position.x));
 +
for(var i =0; i < yticklabels.length;i++)
 +
{
 +
yticklabels[i].rotation.y = -Math.PI/2 + Math.atan2((yticklabels[i].position.y-camera.position.y),(yticklabels[i].position.x-camera.position.x));
 +
}
 +
for(var i =0; i < xticklabels.length;i++)
 +
{
 +
xticklabels[i].rotation.y = -Math.PI/2 + Math.atan2((xticklabels[i].position.y-camera.position.y),(xticklabels[i].position.x-camera.position.x));
 +
}
 +
 +
 +
//renderer.clear();
 +
            renderer.render(scene, camera);
 +
}
 +
 +
function update3DPlotMeshes()
 +
{
 +
    var datameshes = [];
 +
    var datalines = [];
 +
    var errbars = [];
 +
    $('#mw_selectmenu td').each(
 +
        function(index)
 +
        {
 +
            if($(this).hasClass("selected"))
 +
            {
 +
                if(plot_mesh[index])
 +
                {
 +
                    datameshes.push(plot_mesh[index]);
 +
                    datalines.push(meshchildren[index]);
 +
                    errbars.push(errorbars_3d[index]);
 +
                }
 +
            }
 +
        }
 +
    );
 +
    for(var i = 0;i < plot_mesh.length; i++)
 +
    {
 +
        plot_obj.removeChild(plot_mesh[i]);
 +
        plot_obj.removeChild(errorbars_3d[i]);
 +
        plot_obj.removeChild(meshchildren[i]);
 +
    }
 +
    for(var i=0;i < datameshes.length; i++)
 +
    {
 +
        plot_obj.addChild(datameshes[i]);
 +
        plot_obj.addChild(errbars[i]);
 +
        plot_obj.addChild(datalines[i]);
 +
    }
 +
 +
    renderer.render(scene, camera);
 +
}
// RGB <-> HSL conversions based on equations from wikipedia.
// RGB <-> HSL conversions based on equations from wikipedia.
Line 9: Line 73:
function RGB2HSL(r,g,b)
function RGB2HSL(r,g,b)
{
{
-
var alpha = 1/2*(2*r-g-b);
+
    var alpha = 1/2*(2*r-g-b);
-
var beta = Math.sqrt(3)/2*(g-b);
+
    var beta = Math.sqrt(3)/2*(g-b);
-
var C = Math.sqrt(alpha^2 + beta^2);
+
    var C = Math.sqrt(alpha^2 + beta^2);
-
var h = Math.atan2(beta, alpha);
+
    var h = Math.atan2(beta, alpha);
-
if(h < 0)
+
    if(h < 0)
-
{
+
    {
-
h += 2*Math.PI;
+
        h += 2*Math.PI;
-
}
+
    }
-
var l = 0.3*r + 0.59*g + 0.11*b;
+
    var l = 0.3*r + 0.59*g + 0.11*b;
-
if(C > 0)
+
    if(C > 0)
-
{
+
    {
-
s = C/(1 - Math.abs(2*l-1));
+
        s = C/(1 - Math.abs(2*l-1));
-
} else
+
    } else
-
{
+
    {
-
s = 0;
+
        s = 0;
-
}
+
    }
-
+
   
-
return {h:h,s:s,l:l};
+
    return {h:h,s:s,l:l};
}
}
function HSL2RGB(h,s,l)
function HSL2RGB(h,s,l)
{
{
-
+
   
-
var C = (1-Math.abs(2*l-1))*s;
+
    var C = (1-Math.abs(2*l-1))*s;
-
var Hprime = h / Math.PI*3;
+
    var Hprime = h / Math.PI*3;
-
var X = C*(1 - Math.abs(Hprime%2-1));
+
    var X = C*(1 - Math.abs(Hprime%2-1));
-
if(h < 0) {
+
    if(h < 0) {
-
var r = g = b = 0;
+
    var r = g = b = 0;
-
} else if(h < 1) {
+
    } else if(h < 1) {
-
var r = C, g = X, b = 0;
+
    var r = C, g = X, b = 0;
-
} else if(h < 2) {
+
    } else if(h < 2) {
-
var r = X, g = C, b = 0;
+
    var r = X, g = C, b = 0;
-
} else if(h < 3) {
+
    } else if(h < 3) {
-
var r = 0, g = C, b = X;
+
    var r = 0, g = C, b = X;
-
} else if(h < 4) {
+
    } else if(h < 4) {
-
var r = 0, g = X, b = C;
+
    var r = 0, g = X, b = C;
-
} else if(h < 5) {
+
    } else if(h < 5) {
-
var r = X, g = 0, b = C;
+
    var r = X, g = 0, b = C;
-
} else if(h < 6) {
+
    } else if(h < 6) {
-
var r = C, g = 0, b = X;
+
    var r = C, g = 0, b = X;
-
}
+
    }
-
m = l - C/2;
+
    m = l - C/2;
-
r = r + m;
+
    r = r + m;
-
g = g + m;
+
    g = g + m;
-
b = b + m;
+
    b = b + m;
-
return {r:r, g:g, b:b}
+
    return {r:r, g:g, b:b}
}
}
Line 66: Line 130:
function interp2(x1, y1, x2, y2, z0, z1, z2, z3, x, y)
function interp2(x1, y1, x2, y2, z0, z1, z2, z3, x, y)
{
{
-
fr1 = (x-x1)/(x2-x1)*z1 + (x2-x)/(x2-x1)*z0;
+
    fr1 = (x-x1)/(x2-x1)*z1 + (x2-x)/(x2-x1)*z0;
-
fr2 = (x-x1)/(x2-x1)*z3 + (x2-x)/(x2-x1)*z2;
+
    fr2 = (x-x1)/(x2-x1)*z3 + (x2-x)/(x2-x1)*z2;
if(!fr1 || !fr2)
if(!fr1 || !fr2)
{
{
alert("MAJOR INTERPOLATION PROBLEMS!\nx1:"+x1+"\ny1:"+y1+"\nx2:"+x2+"\ny2:"+y2+"\nzs:"+z0+","+z1+","+z2+","+z3+"\n("+x+","+y+")");
alert("MAJOR INTERPOLATION PROBLEMS!\nx1:"+x1+"\ny1:"+y1+"\nx2:"+x2+"\ny2:"+y2+"\nzs:"+z0+","+z1+","+z2+","+z3+"\n("+x+","+y+")");
}
}
-
return ((y-y1)/(y2-y1)*fr2 + (y2-y)/(y2-y1)*fr1);
+
    return ((y-y1)/(y2-y1)*fr2 + (y2-y)/(y2-y1)*fr1);
}
}
function colorRamp(value, colormap)
function colorRamp(value, colormap)
{
{
-
if(value > 1)
+
    if(value > 1)
-
{
+
    {
-
value = 1;
+
        value = 1;
-
}
+
    }
-
if(value < 0)
+
    if(value < 0)
-
{
+
    {
-
value = 0;
+
        value = 0;
-
}
+
    }
-
var maxval = colormap.length-1;
+
    var maxval = colormap.length-1;
-
var newval = value*maxval;
+
    var newval = value*maxval;
-
var highval = Math.ceil(newval);
+
    var highval = Math.ceil(newval);
-
var lowval = highval - 1;
+
    var lowval = highval - 1;
-
if(highval == 0)
+
    if(highval == 0)
-
{
+
    {
-
lowval = 0;
+
        lowval = 0;
-
highval = 1;
+
        highval = 1;
-
}
+
    }
-
lowcolor = RGB2HSL(colormap[lowval][0], colormap[lowval][1], colormap[lowval][2]);
+
    lowcolor = RGB2HSL(colormap[lowval][0], colormap[lowval][1], colormap[lowval][2]);
-
highcolor = RGB2HSL(colormap[highval][0], colormap[highval][1], colormap[highval][2]);
+
    highcolor = RGB2HSL(colormap[highval][0], colormap[highval][1], colormap[highval][2]);
-
var h = lowcolor.h*(highval - newval) + highcolor.h*(newval - lowval);
+
    var h = lowcolor.h*(highval - newval) + highcolor.h*(newval - lowval);
-
var s = lowcolor.s*(highval - newval) + highcolor.s*(newval - lowval);
+
    var s = lowcolor.s*(highval - newval) + highcolor.s*(newval - lowval);
-
var v = lowcolor.l*(highval - newval) + highcolor.l*(newval - lowval);
+
    var v = lowcolor.l*(highval - newval) + highcolor.l*(newval - lowval);
//s = lowcolor.s;
//s = lowcolor.s;
//v = lowcolor.l;
//v = lowcolor.l;
-
newcolor = HSL2RGB(h,s,v);
+
    newcolor = HSL2RGB(h,s,v);
-
newcolor.r = colormap[lowval][0]*(highval - newval) + colormap[highval][0]*(newval - lowval);
+
    newcolor.r = colormap[lowval][0]*(highval - newval) + colormap[highval][0]*(newval - lowval);
-
newcolor.g = colormap[lowval][1]*(highval - newval) + colormap[highval][1]*(newval - lowval);
+
    newcolor.g = colormap[lowval][1]*(highval - newval) + colormap[highval][1]*(newval - lowval);
-
newcolor.b = colormap[lowval][2]*(highval - newval) + colormap[highval][2]*(newval - lowval);
+
    newcolor.b = colormap[lowval][2]*(highval - newval) + colormap[highval][2]*(newval - lowval);
-
return [newcolor.r, newcolor.g, newcolor.b];
+
    return [newcolor.r, newcolor.g, newcolor.b];
}
}
Line 176: Line 240:
   [0.56349,  0.00000,  0.00000],
   [0.56349,  0.00000,  0.00000],
   [0.50000,  0.00000,  0.00000]];
   [0.50000,  0.00000,  0.00000]];
 +
 +
//cool_color_ramp = [[0,0,0], [0,0,1], [1,1,1]];
var WIDTH = 650;
var WIDTH = 650;
Line 185: Line 251:
mutantcolors = ["white", "#ff6666", "orange", "yellow", "#66ff66", "#66ffff", "#ddaaff", "pink"];
mutantcolors = ["white", "#ff6666", "orange", "yellow", "#66ff66", "#66ffff", "#ddaaff", "pink"];
 +
mutantcolors_hex = [0xffffff, 0xff6666, 0xffa500, 0xffff00, 0x66ff66, 0x66ffff, 0xddaaff, 0xffc0cb];
selectedColor = "orange";
selectedColor = "orange";
widget_mode = "2D";
widget_mode = "2D";
have_3d_data = false;
have_3d_data = false;
$(document).ready(function(){
$(document).ready(function(){
-
$("#mutantwidget").append('<div id="mw_selectmenu"/>');
+
    $("#mutantwidget").append('<div id="mw_selectmenu"/>');
-
$("#mutantwidget").append('<div id="mw_optionsmenu"><table id="mw_optionstable"></table></div>');
+
    $("#mutantwidget").append('<div id="mw_optionsmenu"><table id="mw_optionstable"></table></div>');
-
$("#mw_selectmenu").append("<table id='seltable'/>");
+
    $("#mw_selectmenu").append("<table id='seltable'/>");
-
$('#mutantwidget h3').wrapInner('<td/>').children().unwrap().css({opacity:.3}).wrap('<tr/>');
+
    $('#mutantwidget h3').wrapInner('<td/>').children().unwrap().css({opacity:.3}).wrap('<tr/>');
-
$('#mutantwidget tr').appendTo($('#mutantwidget #seltable'));
+
    $('#mutantwidget tr').appendTo($('#mutantwidget #seltable'));
         $('#mw_optionstable').append("<tr><td onClick>2D Plot</td></tr>");
         $('#mw_optionstable').append("<tr><td onClick>2D Plot</td></tr>");
Line 201: Line 268:
         {
         {
             $('#mw_optionstable').append("<tr><td>3D Plot</td></tr>");
             $('#mw_optionstable').append("<tr><td>3D Plot</td></tr>");
-
have_3d_data = true;
+
        have_3d_data = true;
         }
         }
-
        $('#mw_optionstable').append("<tr><td>Sequence</td></tr>");
+
  //    $('#mw_optionstable').append("<tr><td>Sequence</td></tr>");
-
$('#mw_optionstable td').css({opacity:0.3});
+
    $('#mw_optionstable td').css({opacity:0.3});
-
$('#mutantwidget').prepend('<div id="mw_grapharea"/>');
+
    $('#mutantwidget').prepend('<div id="mw_grapharea"/>');
-
$('#mw_grapharea').append('<div id="mw_plot"/>');
+
    $('#mw_grapharea').append('<div id="mw_plot"/>');
-
$('#mw_grapharea').append('<div id="mw_3dplot"/>');
+
    $('#mw_grapharea').append('<div id="mw_3dplot"/>');
 +
    $('#mw_3dplot').append("<table id='navbuttons3d' style='position:absolute;bottom:0px;left:350px;'><tr><td>&lt;</td><td>&gt;</td></tr></table>")
 +
    $('#mw_3dplot #navbuttons3d td').css({width:'15px'})
 +
    $('#mw_3dplot #navbuttons3d td').eq(0).mousedown(function(){theta -= Math.PI/8;rerender();})
 +
    $('#mw_3dplot #navbuttons3d td').eq(1).mousedown(function(){theta += Math.PI/8;rerender();})
         $('#mw_3dplot').toggle();
         $('#mw_3dplot').toggle();
-
$('#mutantwidget').parent().append('<div id="mw_sequencearea"/>');
+
    $('#mutantwidget').parent().append('<div id="mw_sequencearea"/>');
-
$('#mutantwidget span').hide();
+
    $('#mutantwidget span').hide();
-
$('#mutantwidget .sequence').appendTo($('#mw_sequencearea'));
+
    $('#mutantwidget .sequence').appendTo($('#mw_sequencearea'));
-
         $('#mutantwidget').append("<div class='yaxis'>Relative Strength</div>");
+
         $('#mutantwidget').append("<div class='yaxis'>Relative Fluorescence</div>");
 +
        $('#mutantwidget').append("<div class='xaxis'>Arabinose (wt%)</div>");
          
          
-
$('#mw_selectmenu td').mouseover(function()
+
    $('#mw_selectmenu td').mouseover(function()
-
{
+
    {
-
if(!$(this).hasClass("selected"))
+
        if(!$(this).hasClass("selected"))
-
{
+
        {
-
$(this).dequeue().animate({"opacity":1, "color":mutantcolors[$(this).parent().index()]}, 500);
+
            $(this).dequeue().animate({"opacity":1, "color":mutantcolors[$(this).parent().index()]}, 500);
-
}
+
        }
-
});
+
    });
-
$('#mw_optionsmenu td').mouseover(function()
+
    $('#mw_optionsmenu td').mouseover(function()
-
{
+
    {
-
if(!$(this).hasClass("selected"))
+
        if(!$(this).hasClass("selected"))
-
{
+
        {
-
$(this).dequeue().animate({"opacity":1, "color":selectedColor}, 500);
+
            $(this).dequeue().animate({"opacity":1, "color":selectedColor}, 500);
-
}
+
        }
-
});
+
    });
-
$('#mw_optionsmenu td').mouseout(function()
+
    $('#mw_optionsmenu td').mouseout(function()
-
{
+
    {
-
if(!$(this).hasClass("selected"))
+
        if(!$(this).hasClass("selected"))
-
{
+
        {
-
$(this).dequeue().animate({"opacity":.3, color:"rgb(225, 225, 225)"}, 500);
+
            $(this).dequeue().animate({"opacity":.3, color:"rgb(225, 225, 225)"}, 500);
-
}
+
        }
-
});
+
    });
-
$('#mw_selectmenu td').mouseout(function()
+
    $('#mw_selectmenu td').mouseout(function()
-
{
+
    {
-
if(!$(this).hasClass("selected"))
+
        if(!$(this).hasClass("selected"))
-
{
+
        {
-
$(this).dequeue().animate({"opacity":.3, color:"rgb(225, 225, 225)"}, 500);
+
            $(this).dequeue().animate({"opacity":.3, color:"rgb(225, 225, 225)"}, 500);
-
}
+
        }
-
});
+
    });
-
$('#mw_optionsmenu td').click(
+
    $('#mw_optionsmenu td').click(
-
function() {
+
        function() {
-
menuitem = $(this).parent().index();
+
            menuitem = $(this).parent().index();
-
if(!$(this).hasClass("selected"))
+
            if(!$(this).hasClass("selected"))
-
{
+
            {
-
$('#mw_optionsmenu td').removeClass("selected");
+
                $('#mw_optionsmenu td').removeClass("selected");
-
$(this).addClass("selected");
+
                $(this).addClass("selected");
-
$('#mw_optionsmenu td').mouseout();
+
                $('#mw_optionsmenu td').mouseout();
-
if($(this).text() == "2D Plot")
+
                if($(this).text() == "2D Plot")
-
{
+
                {
-
$('#mw_3dplot').hide();
+
                    $('#mw_3dplot').hide();
-
$('#mw_plot').show();
+
                    $('#mw_plot').show();
-
}
+
                    $('.yaxis').show();
-
if($(this).text() == "3D Plot")
+
                    $('.xaxis').show();
-
{
+
widget_mode = "2D";
-
$('#mw_plot').hide();
+
            dataseries = [];
-
$('#mw_3dplot').show();
+
            $('#mw_selectmenu td').each(
-
}
+
                function(index)
-
}
+
                {
-
+
                    if($(this).hasClass("selected"))
-
}
+
                    {
-
);
+
                        if(data[index])
 +
                        {
 +
                            dataseries.push(data[index]);
 +
                            dataseries.push(errbars_2d[index]);
 +
                        }
 +
                    }
 +
                }
 +
            );
 +
            if(!dataseries[0])
 +
            {
 +
                dataseries.push([[0,0]]);
 +
            }
 +
            $.plot($("#mw_plot"), dataseries,
 +
            {
 +
                xaxis: {max:.014, min:0},
 +
                yaxis: {max: 1.2, min:0},
 +
                grid: {  },
 +
                                points: {show: true},
 +
                                lines: {show: true}
 +
            });
 +
                }
 +
                if($(this).text() == "3D Plot")
 +
                {
 +
                    $('#mw_plot').hide();
 +
                    $('#mw_3dplot').show();
 +
                    $('.yaxis').hide();
 +
                    $('.xaxis').hide();
 +
widget_mode = "3D";
 +
update3DPlotMeshes();
 +
                }
 +
            }
 +
           
 +
        }
 +
    );
         $('#mw_optionsmenu td').eq(0).mouseover().click();
         $('#mw_optionsmenu td').eq(0).mouseover().click();
-
$('#mw_selectmenu td').click(
+
    $('#mw_selectmenu td').click(
-
function() {
+
        function() {
 +
            if($(this).hasClass("selected"))
 +
            {
 +
                $(this).removeClass("selected");
 +
                $(this).mouseout();
 +
                $('#mw_sequencearea').children().eq($(this).parent().index()).hide();
 +
            } else
 +
            {
 +
                $(this).dequeue().css({opacity:1});
 +
                $(this).addClass("selected");
 +
                $('#mw_sequencearea').children().hide();
 +
    //          $('#mw_sequencearea').children().eq($(this).parent().index()).show();
 +
            }
if(widget_mode == "2D")
if(widget_mode == "2D")
{
{
-
             if($(this).hasClass("selected"))
+
             dataseries = [];
-
{
+
            $('#mw_selectmenu td').each(
-
$(this).removeClass("selected");
+
                function(index)
-
$('#mw_sequencearea').children().eq($(this).parent().index()).hide();
+
                {
-
} else
+
                    if($(this).hasClass("selected"))
-
{
+
                    {
-
$(this).dequeue().css({opacity:1});
+
                        if(data[index])
-
$(this).addClass("selected");
+
                        {  
-
$('#mw_sequencearea').children().hide();
+
                            dataseries.push(data[index]);
-
$('#mw_sequencearea').children().eq($(this).parent().index()).show();
+
                            dataseries.push(errbars_2d[index]);
-
}
+
                        }
-
dataseries = [];
+
                    }
-
$('#mutantwidget td').each(
+
                }
-
function(index)
+
            );
-
{
+
            if(!dataseries[0])
-
if($(this).hasClass("selected"))
+
            {
-
{
+
                dataseries.push([[0,0]]);
-
if(data[index])
+
            }
-
{  
+
            $.plot($("#mw_plot"), dataseries,  
-
dataseries.push(data[index]);
+
            {  
-
}
+
                xaxis: {max:.014, min:0},
-
}
+
                yaxis: {max: 1.2, min:0},
-
}
+
                grid: { },
-
);
+
-
if(!dataseries[0])
+
-
{
+
-
dataseries.push([[0,0]]);
+
-
}
+
-
$.plot($("#mw_plot"), dataseries,  
+
-
{  
+
-
xaxis: {max:.014, min:0},
+
-
yaxis: {max: 1.0, min:0},
+
-
grid: { color:"rgba(225, 225, 225, 1)" },
+
                                 points: {show: true},  
                                 points: {show: true},  
                                 lines: {show: true}
                                 lines: {show: true}
-
});
+
            });
}else if(widget_mode == "3D")
}else if(widget_mode == "3D")
{
{
 +
    update3DPlotMeshes();
}
}
-
}  
+
        }  
-
);
+
    );
-
//Split sequences
+
    //Split sequences
-
$('#mutantwidget .sequence').each(
+
    $('#mutantwidget .sequence').each(
-
function(index) {
+
        function(index) {
-
var curloc = 0;
+
            var curloc = 0;
-
var curseq = $(this).text();
+
            var curseq = $(this).text();
-
$(this).html('');
+
            $(this).html('');
-
while(curloc < curseq.length)
+
            while(curloc < curseq.length)
-
{
+
            {
-
oldloc = curloc;
+
                oldloc = curloc;
-
$(this).append(curseq.substr(oldloc, 15)).append(" ");
+
                $(this).append(curseq.substr(oldloc, 15)).append(" ");
-
curloc += 10;
+
                curloc += 10;
-
}
+
            }
-
}
+
        }
-
);
+
    );
-
//Extract plotting data
+
    //Extract plotting data
-
data = [];
+
    data = [];
-
$('#mutantwidget .xdata').each(
+
    errbars_2d = [];
-
function(index)
+
    $('#mutantwidget .xdata').each(
-
{
+
        function(index)
-
data.push({color:mutantcolors[index], data:[]});
+
        {
-
var thisdatax = $(this).text().split(',');
+
            data.push({color:mutantcolors[index], data:[]});
-
var thisdatay = $('#mutantwidget .ydata').eq(index).text().split(',');
+
    errbars_2d.push({color:"#ff0000", data:[], points:{show:false}});
-
var i;
+
            var thisdatax = $(this).text().split(',');
-
for(i=0; i < thisdatay.length; ++i)
+
            var thisdatay = $('#mutantwidget .ydata').eq(index).text().split(',');
-
{
+
            var thisdataerr = $('#mutantwidget .stdevs').eq(index).text().split(',');
-
thisdatay[i] = parseFloat(thisdatay[i]);
+
            var i;
-
}
+
            for(i=0; i < thisdatay.length; ++i)
-
for(i=0; i < thisdatax.length; ++i)
+
            {
-
{
+
                thisdatay[i] = parseFloat(thisdatay[i]);
-
thisdatax[i] = parseFloat(thisdatax[i]);
+
thisdataerr[i] = parseFloat(thisdataerr[i]);
-
data[index].data.push([thisdatax[i], thisdatay[i]])
+
            }
-
}
+
            for(i=0; i < thisdatax.length; ++i)
-
+
            {
-
}
+
                thisdatax[i] = parseFloat(thisdatax[i]);
-
);
+
                data[index].data.push([thisdatax[i], thisdatay[i]]);
-
$.plot($("#mw_plot"), [[0,0]],  
+
            }
-
{  
+
    var errbarwidth = Math.max.apply(null,thisdatax)/150;
-
xaxis: {max:.014, min:0},
+
            for(i=0; i < thisdatax.length; ++i)
-
yaxis: {max: 1.0, min:0},
+
            {
-
grid: { color:"rgba(225, 225, 225, 1)" },
+
errbars_2d[index].data.push([thisdatax[i], thisdatay[i]+thisdataerr[i]]);
-
});
+
errbars_2d[index].data.push([thisdatax[i], thisdatay[i]-thisdataerr[i]]);
 +
errbars_2d[index].data.push([null, null]);
 +
errbars_2d[index].data.push([thisdatax[i]-errbarwidth, thisdatay[i]+thisdataerr[i]]);
 +
errbars_2d[index].data.push([thisdatax[i]+errbarwidth, thisdatay[i]+thisdataerr[i]]);
 +
errbars_2d[index].data.push([null, null]);
 +
errbars_2d[index].data.push([thisdatax[i]-errbarwidth, thisdatay[i]-thisdataerr[i]]);
 +
errbars_2d[index].data.push([thisdatax[i]+errbarwidth, thisdatay[i]-thisdataerr[i]]);
 +
errbars_2d[index].data.push([null, null]);
 +
    }
 +
           
 +
        }
 +
    );
 +
            $.plot($("#mw_plot"), [[0,0]],  
 +
            {  
 +
                xaxis: {max:.014, min:0},
 +
                yaxis: {max: 1.2, min:0},
 +
                grid: { },
 +
            });
});
});
sphereMaterial = new THREE.MeshBasicMaterial(
sphereMaterial = new THREE.MeshBasicMaterial(
-
{
+
    {
-
color:0xCC0000
+
        color:0xCC0000
-
}
+
    }
);
);
plotMaterial = new THREE.MeshFaceMaterial(
plotMaterial = new THREE.MeshFaceMaterial(
-
// {
+
// {
-
// color:0xCC0000,
+
//     color:0xCC0000,
-
// opacity:.4,
+
//     opacity:.4,
-
// vertexColors:true
+
//     vertexColors:true
-
// }
+
// }
);
);
pointMaterial = new THREE.ParticleCanvasMaterial( { color: 0xffffff, program: function(context)
pointMaterial = new THREE.ParticleCanvasMaterial( { color: 0xffffff, program: function(context)
{
{
         context.beginPath();
         context.beginPath();
-
context.arc( 0, 0, 20, 0,  Math.PI * 2, true );
+
    context.arc( 0, 0, .5, 0,  Math.PI * 2, true );
-
context.fill();
+
    context.fill();
} } );
} } );
axisMat = new THREE.LineBasicMaterial(
axisMat = new THREE.LineBasicMaterial(
-
{
+
    {
-
color:0xffffff,
+
        color:0xffffff,
-
opacity:0.6,
+
        opacity:1,
-
linewidth:1
+
        linewidth:1
-
}
+
    }
);
);
axisdimensions = [0, 5, 0, 0.0140, 0, 1];
axisdimensions = [0, 5, 0, 0.0140, 0, 1];
Line 395: Line 520:
$(document).ready(function() {
$(document).ready(function() {
-
data_3d = [];
+
    data_3d = [];
-
particles = new THREE.Geometry();
+
    errorbars_3d = [];
-
//Parse datas!
+
particles = [];
-
$('.zdata_3d').each(
+
meshchildren = [];
-
function(index)
+
    //Parse datas!
-
{
+
    $('.zdata_3d').each(
-
thisdataz = $(this).text().split(',');
+
        function(index)
-
thisdatax = $('.xdata_3d').eq(index).text().split(',');
+
        {
-
thisdatay = $('.ydata_3d').eq(index).text().split(',');
+
particles.push(new THREE.Geometry());
 +
            thisdataz = $(this).text().split(',');
 +
            thisdatax = $('.xdata_3d').eq(index).text().split(',');
 +
            thisdatay = $('.ydata_3d').eq(index).text().split(',');
 +
            thisdataerr = $('.stdevs_3d').eq(index).text().split(',');
 +
 
 +
 
//numxpoints = thisdatax.length;
//numxpoints = thisdatax.length;
//numypoints = thisdatay.length;
//numypoints = thisdatay.length;
-
data_3d.push(new THREE.PlaneGeometry(100,100,numxpoints-1, numypoints-1));
+
meshchildren.push(new THREE.Object3D());
-
var i;
+
errorbars_3d.push(new THREE.Object3D());
-
for(i=0; i < thisdatax.length; ++i)
+
            data_3d.push(new THREE.PlaneGeometry(100,100,numxpoints-1, numypoints-1));
-
{
+
            var i;
-
thisdatax[i] = parseFloat(thisdatax[i]);
+
            for(i=0; i < thisdatax.length; ++i)
-
}
+
            {
-
for(i=0; i < thisdatay.length; ++i)
+
                thisdatax[i] = parseFloat(thisdatax[i]);
-
{
+
            }
-
thisdatay[i] = parseFloat(thisdatay[i]);
+
            for(i=0; i < thisdatay.length; ++i)
-
}
+
            {
-
for(i=0; i < thisdataz.length; ++i)
+
                thisdatay[i] = parseFloat(thisdatay[i]);
-
{
+
            }
-
thisdataz[i] = parseFloat(thisdataz[i]);
+
            for(i=0; i < thisdataz.length; ++i)
-
var particle = new THREE.Vertex(
+
            {
-
             new THREE.Vector3(thisdatax[i%thisdatax.length]/axisdimensions[1]*100, thisdatay[Math.floor(i/thisdatax.length)]*axisdimensions[3]*100, thisdataz[i]*axisdimensions[5]*100)
+
                thisdataz[i] = parseFloat(thisdataz[i]);
-
        );
+
 
-
particles.vertices.push(particle);
+
/*
 +
var particle = new THREE.Vertex(
 +
            new THREE.Vector3(thisdatax[i%thisdatax.length]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/thisdatax.length)]/axisdimensions[3]*100,
 +
thisdataz[i]/axisdimensions[5]*100)
 +
        );
 +
particles[index].vertices.push(particle);
 +
var newparticle = new THREE.Particle(pointMaterial)
 +
newparticle.position.x = particle.position.x;
 +
newparticle.position.y = particle.position.y;
 +
newparticle.position.z = particle.position.z;
 +
meshchildren[index].addChild(newparticle);
 +
*/
 +
 
 +
 +
             }
 +
var lineMat = new THREE.LineBasicMaterial(
 +
    {
 +
color:mutantcolors_hex[index],
 +
opacity:1,
 +
linewidth:2
 +
    }
 +
);
 +
for(i=0; i < thisdataerr.length; i++)
 +
{
 +
thisdataerr[i] = parseFloat(thisdataerr[i]);
 +
var errbargeom = new THREE.Geometry();
 +
errbargeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[i%thisdatax.length]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/thisdatax.length)]/axisdimensions[3]*100,
 +
thisdataz[i]/axisdimensions[5]*100-thisdataerr[i]/axisdimensions[5]*100
 +
)));
 +
errbargeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[i%thisdatax.length]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/thisdatax.length)]/axisdimensions[3]*100,
 +
thisdataz[i]/axisdimensions[5]*100+thisdataerr[i]/axisdimensions[5]*100
 +
)));
 +
var errbar = new THREE.Line(errbargeom, lineMat);
 +
errorbars_3d[index].addChild(errbar);
 +
}
 +
//Particles look like ass.
 +
//Use lines instead.
 +
 
 +
for(i=0; i < thisdatax.length*(thisdatay.length-1); i++)
 +
{
 +
 
 +
var linegeom = new THREE.Geometry();
 +
linegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[i%thisdatax.length]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/thisdatax.length)]/axisdimensions[3]*100,
 +
thisdataz[i]/axisdimensions[5]*100
 +
)));
 +
linegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[(i+thisdatax.length)%thisdatax.length]/axisdimensions[1]*100,
 +
thisdatay[Math.floor((i+thisdatax.length)/thisdatax.length)]/axisdimensions[3]*100,
 +
thisdataz[i+thisdatax.length]/axisdimensions[5]*100
 +
)));
 +
meshchildren[index].addChild(new THREE.Line(linegeom, lineMat));
 +
}
 +
for(i=0; i < (thisdatax.length-1)*(thisdatay.length); i++)
 +
{
 +
//Particles look like ass.
 +
//Use lines instead.
 +
var linegeom = new THREE.Geometry();
 +
linegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[i%(thisdatax.length-1)]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/(thisdatax.length-1))]/axisdimensions[3]*100,
 +
thisdataz[Math.floor(i/(thisdatax.length-1))+i]/axisdimensions[5]*100
 +
)));
 +
linegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(
 +
thisdatax[i%(thisdatax.length-1)+1]/axisdimensions[1]*100,
 +
thisdatay[Math.floor(i/(thisdatax.length-1))]/axisdimensions[3]*100,
 +
thisdataz[Math.floor(i/(thisdatax.length-1))+i+1]/axisdimensions[5]*100
 +
)));
 +
meshchildren[index].addChild(new THREE.Line(linegeom, lineMat));
 +
}
 +
           
 +
            for(i=0; i < numxpoints; ++i)
 +
            {
 +
                for(var j=0; j < numypoints; ++j)
 +
                {
 +
                    var thisx = thisdatax[thisdatax.length-1]*i/(numxpoints-1);
 +
                    var thisy = thisdatay[thisdatay.length-1]*j/(numypoints-1);
 +
                    data_3d[index].vertices[j*numxpoints+i].position.x = thisx/axisdimensions[1]*100;
 +
                    data_3d[index].vertices[j*numxpoints+i].position.y = thisy/axisdimensions[3]*100;
 +
                    //Find flanking x,y values
 +
                    var kx = ky = 0;
 +
                    while(thisx >= thisdatax[kx]) {
 +
                        kx=kx+1;
 +
                    }
 +
                    while(thisy >= thisdatay[ky]) {
 +
                        ky=ky+1;
 +
                    }
 +
if(kx > thisdatax.length-1)
 +
{
 +
kx = thisdatax.length-1;
 +
}
 +
if(ky > thisdatay.length-1)
 +
{
 +
ky = thisdatay.length-1;
 +
}
 +
                    kx--;
 +
                    ky--;
-
}
 
-
 
-
for(i=0; i < numxpoints; ++i)
 
-
{
 
-
for(var j=0; j < numypoints; ++j)
 
-
{
 
-
var thisx = thisdatax[thisdatax.length-1]*i/numxpoints;
 
-
var thisy = thisdatay[thisdatay.length-1]*j/numypoints;
 
-
data_3d[index].vertices[j*numxpoints+i].position.x = thisx/axisdimensions[1]*100;
 
-
data_3d[index].vertices[j*numxpoints+i].position.y = thisy/axisdimensions[3]*100;
 
-
//Find flanking x,y values
 
-
var kx = ky = 0;
 
-
while(thisx >= thisdatax[kx]) {
 
-
kx=kx+1;
 
-
}
 
-
while(thisy >= thisdatay[ky]) {
 
-
ky=ky+1;
 
-
}
 
-
kx--;
 
-
ky--;
 
kx = parseInt(kx);
kx = parseInt(kx);
ky = parseInt(ky);
ky = parseInt(ky);
Line 454: Line 667:
alert("Porblem!\nkx:" + kx + "\nky:" + ky + "\nkx is a "+typeof(kx) + "\nky is a" +typeof(ky) + "\nset:" + index);
alert("Porblem!\nkx:" + kx + "\nky:" + ky + "\nkx is a "+typeof(kx) + "\nky is a" +typeof(ky) + "\nset:" + index);
}
}
-
thisz = interp2(thisdatax[kx],  
+
                    thisz = interp2(thisdatax[kx],  
-
thisdatay[ky],  
+
                            thisdatay[ky],  
-
thisdatax[kx+1],  
+
                            thisdatax[kx+1],  
-
thisdatay[ky+1],  
+
                            thisdatay[ky+1],  
-
thisdataz[tli],
+
                            thisdataz[tli],
-
thisdataz[tri],
+
                            thisdataz[tri],
-
thisdataz[bli],
+
                            thisdataz[bli],
-
thisdataz[bri], thisx, thisy)
+
                            thisdataz[bri], thisx, thisy)
-
data_3d[index].vertices[j*numxpoints+i].position.z = thisz/axisdimensions[5]*100;
+
                    data_3d[index].vertices[j*numxpoints+i].position.z = thisz/axisdimensions[5]*100;
-
}
+
                }
-
}
+
            }
-
data_3d[index].computeCentroids();
+
            data_3d[index].computeCentroids();
-
//vertex colors
+
            //vertex colors
/*
/*
-
var colors = [];
+
            var colors = [];
-
for(i=0; i < thisdataz.length; ++i)
+
            for(i=0; i < thisdataz.length; ++i)
-
{
+
            {
-
var color = new THREE.Color(0x550000);
+
                var color = new THREE.Color(0x550000);
-
// color.setHSV(.125, 1, 0);
+
//             color.setHSV(.125, 1, 0);
-
colors.push(color);
+
                colors.push(color);
-
}
+
            }
*/
*/
-
materials = [];
+
            materials = [];
-
for(i=0; i < data_3d[index].faces.length; ++i)
+
            for(i=0; i < data_3d[index].faces.length; ++i)
-
{
+
            {
-
thisfacecolor = (
+
                thisfacecolor = (
-
data_3d[index].vertices[data_3d[index].faces[i].a].position.z+
+
                data_3d[index].vertices[data_3d[index].faces[i].a].position.z+
-
data_3d[index].vertices[data_3d[index].faces[i].b].position.z+
+
                data_3d[index].vertices[data_3d[index].faces[i].b].position.z+
-
data_3d[index].vertices[data_3d[index].faces[i].c].position.z+
+
                data_3d[index].vertices[data_3d[index].faces[i].c].position.z+
-
data_3d[index].vertices[data_3d[index].faces[i].d].position.z)/4/100;
+
                data_3d[index].vertices[data_3d[index].faces[i].d].position.z)/4/100;
-
materials.push([new THREE.MeshBasicMaterial(
+
                materials.push([new THREE.MeshBasicMaterial(
-
{
+
                    {
-
color:thisfacecolor*0xffffff,
+
                        color:thisfacecolor*0xffffff,
-
opacity:1
+
                        opacity:.6
-
}
+
                    }
-
)]);
+
                )]);
if(!thisfacecolor)
if(!thisfacecolor)
{
{
alert("Something is terribly wrong!\na ("+data_3d[index].faces[i].a+"):"+data_3d[index].vertices[data_3d[index].faces[i].a].position.z+"\nb("+data_3d[index].faces[i].b+"):"+data_3d[index].vertices[data_3d[index].faces[i].b].position.z+"\nc("+data_3d[index].faces[i].c+"):"+data_3d[index].vertices[data_3d[index].faces[i].c].position.z+"\nd("+data_3d[index].faces[i].d+"):"+data_3d[index].vertices[data_3d[index].faces[i].a].position.z);
alert("Something is terribly wrong!\na ("+data_3d[index].faces[i].a+"):"+data_3d[index].vertices[data_3d[index].faces[i].a].position.z+"\nb("+data_3d[index].faces[i].b+"):"+data_3d[index].vertices[data_3d[index].faces[i].b].position.z+"\nc("+data_3d[index].faces[i].c+"):"+data_3d[index].vertices[data_3d[index].faces[i].c].position.z+"\nd("+data_3d[index].faces[i].d+"):"+data_3d[index].vertices[data_3d[index].faces[i].a].position.z);
}
}
-
var newcolor = colorRamp(thisfacecolor, cool_color_ramp);
+
                var newcolor = colorRamp(thisfacecolor, cool_color_ramp);
-
materials[i][0].color.setRGB(newcolor[0], newcolor[1], newcolor[2]);
+
                materials[i][0].color.setRGB(newcolor[0], newcolor[1], newcolor[2]);
-
data_3d[index].faces[i].materials = materials[i];
+
                data_3d[index].faces[i].materials = materials[i];
-
}
+
            }
-
+
           
-
}
+
        }
-
);
+
    );
 +
 
 +
    var origin = new THREE.Vertex(new THREE.Vector3(0,0,0));
 +
   
 +
theta = -Math.PI/4;
 +
phi = Math.PI/8;
-
//Axis labels
+
    //Axis labels
-
var x = document.createElement("canvas");
+
    var x = document.createElement("canvas");
-
var xc = x.getContext("2d");
+
    var xc = x.getContext("2d");
-
x.width = 400;
+
    x.width = 400;
-
x.height = 40;
+
    x.height = 40;
-
xc.fillStyle = "#ffffff";
+
    xc.fillStyle = "#ffffff";
-
xc.font = "20pt arial";
+
    xc.font = "20pt arial";
-
xc.textBaseline = "top";
+
    xc.textBaseline = "top";
-
xc.fillText("Arabinose (wt%)", 10, 0);
+
    xc.fillText("IPTG (mM)", 10, 0);
-
var xm = new THREE.MeshBasicMaterial({
+
    var xm = new THREE.MeshBasicMaterial({
-
map: new THREE.Texture(x)
+
    map: new THREE.Texture(x)
-
});
+
    });
-
xm.map.needsUpdate = true;
+
    xm.map.needsUpdate = true;
-
xaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
+
    xaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
-
xaxislabel.position.x = 50;
+
    xaxislabel.position.x = -50;
-
xaxislabel.position.y = -2;
+
    xaxislabel.position.y = 0;
-
xaxislabel.position.z = 0;
+
    xaxislabel.position.z = -48;
xaxislabel.scale.x = 0.2;
xaxislabel.scale.x = 0.2;
xaxislabel.scale.y = -0.2;
xaxislabel.scale.y = -0.2;
-
xaxislabel.rotation.x = -Math.PI/2;
+
    xaxislabel.rotation.x = -Math.PI/2;
 +
    xaxislabel.rotation.y = -Math.PI/2;
 +
    xaxislabel.doubleSided = true;
-
var x = document.createElement("canvas");
+
    var x = document.createElement("canvas");
-
var xc = x.getContext("2d");
+
    var xc = x.getContext("2d");
-
x.width = 400;
+
    x.width = 400;
-
x.height = 40;
+
    x.height = 40;
-
xc.fillStyle = "#ffffff";
+
    xc.fillStyle = "#ffffff";
-
xc.font = "20pt arial";
+
    xc.font = "20pt arial";
-
xc.textBaseline = "top";
+
    xc.textBaseline = "top";
-
xc.fillText("IPTG (mM)", 10, 0);
+
    xc.fillText("Arabinose (wt%)", 10, 0);
-
var xm = new THREE.MeshBasicMaterial({
+
    var xm = new THREE.MeshBasicMaterial({
-
map: new THREE.Texture(x)
+
    map: new THREE.Texture(x)
-
});
+
    });
-
xm.map.needsUpdate = true;
+
    xm.map.needsUpdate = true;
-
yaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
+
    yaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
-
yaxislabel.position.x = 50;
+
    yaxislabel.position.x = 0;
-
yaxislabel.position.y = -2;
+
    yaxislabel.position.y = -50;
-
yaxislabel.position.z = 0;
+
    yaxislabel.position.z = -48;
yaxislabel.scale.x = 0.2;
yaxislabel.scale.x = 0.2;
yaxislabel.scale.y = -0.2;
yaxislabel.scale.y = -0.2;
-
yaxislabel.rotation.x = -Math.PI/2;
+
    yaxislabel.rotation.x = -Math.PI/2;
 +
    yaxislabel.doubleSided = true;
-
var x = document.createElement("canvas");
+
    var x = document.createElement("canvas");
-
var xc = x.getContext("2d");
+
    var xc = x.getContext("2d");
-
x.width = 400;
+
    x.width = 400;
-
x.height = 40;
+
    x.height = 40;
-
xc.fillStyle = "#ffffff";
+
    xc.fillStyle = "#ffffff";
-
xc.font = "20pt arial";
+
    xc.font = "20pt arial";
-
xc.textBaseline = "top";
+
    xc.textBaseline = "top";
-
xc.fillText("Relative Fluorescence", 10, 0);
+
    xc.fillText("Relative Fluorescence", 10, 0);
-
var xm = new THREE.MeshBasicMaterial({
+
    var xm = new THREE.MeshBasicMaterial({
-
map: new THREE.Texture(x)
+
    map: new THREE.Texture(x)
-
});
+
    });
-
xm.map.needsUpdate = true;
+
    xm.map.needsUpdate = true;
-
zaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
+
    zaxislabel = new THREE.Mesh(new THREE.PlaneGeometry(400, 40, 2, 2), xm);
-
zaxislabel.position.x = 50;
+
    zaxislabel.position.x = -50;
-
zaxislabel.position.y = -2;
+
    zaxislabel.position.y = -52;
-
zaxislabel.position.z = 0;
+
    zaxislabel.position.z = 0;
 +
    zaxislabel.rotation.x = -Math.PI/2;
 +
    zaxislabel.rotation.y = -Math.PI/2;
 +
    zaxislabel.rotation.z = -Math.PI/2;
zaxislabel.scale.x = 0.2;
zaxislabel.scale.x = 0.2;
zaxislabel.scale.y = -0.2;
zaxislabel.scale.y = -0.2;
-
zaxislabel.rotation.x = -Math.PI/2;
 
-
zaxislabel.doubleSided = true;
+
    zaxislabel.doubleSided = true;
-
zaxislabel.updateMatrix();
+
    zaxislabel.updateMatrix();
-
var $container = $('#mw_3dplot');
+
    var $container = $('#mw_3dplot');
-
$('body').mouseup(function(){
+
    $('body').mouseup(function(){
-
isdragging = false;
+
        isdragging = false;
-
$container.unbind('mousemove');
+
        $container.unbind('mousemove');
-
});
+
    });
-
$container.mousedown(function(event){
+
    $container.mousedown(function(event){
-
isdragging = true;
+
        isdragging = true;
-
lastMouseX = event.pageX;
+
        lastMouseX = event.pageX;
-
lastMouseY = event.pageY;
+
        lastMouseY = event.pageY;
-
$container.mousemove(function(event)
+
        $container.mousemove(function(event)
-
{
+
        {
-
origin_camera.rotation.y += (-lastMouseX + event.pageX)/70;
+
theta += (lastMouseX - event.pageX)/70
-
origin_camera.rotation.x += (-lastMouseY + event.pageY)/70;
+
phi -= (lastMouseY - event.pageY)/70;
-
if(origin_camera.rotation.x > Math.PI/8)
+
            lastMouseX = event.pageX;
-
{
+
            lastMouseY = event.pageY;
-
origin_camera.rotation.x = Math.PI/8;
+
rerender();
-
}
+
        });
-
if(origin_camera.rotation.x < -Math.PI/8)
+
    });
-
{
+
    renderer = new THREE.CanvasRenderer();
-
origin_camera.rotation.x = -Math.PI/8;
+
//renderer.autoClear = false;
-
}
+
    camera = new THREE.OrthoCamera( -75, 75, 75, -75, - 2000, 1000 );
-
lastMouseX = event.pageX;
+
-
lastMouseY = event.pageY;
+
-
renderer.render(scene, camera);
+
-
});
+
-
});
+
-
renderer = new THREE.CanvasRenderer();
+
-
camera = new THREE.OrthoCamera( -75, 75, 75, -75, - 2000, 1000 );
+
-
var scene = new THREE.Scene();
+
    scene = new THREE.Scene();
-
camera.position.z = 150;
+
    camera.position.x = 250;
-
camera.position.y = 75;
+
    camera.position.y = -150;
-
        camera.rotation.y = -Math.PI/6;
+
    camera.position.z = 75;
-
renderer.setSize(WIDTH, HEIGHT);
+
camera.up.y = 0;
-
$container.append(renderer.domElement);
+
camera.up.z = 1;
-
var radius = 50, segments = 16, rings = 16;
+
//        camera.rotation.y = -Math.PI/6;
 +
            camera.position.x = 250*Math.cos(theta);
 +
    camera.position.y = 250*Math.sin(theta);
 +
    renderer.setSize(WIDTH, HEIGHT);
 +
    $container.append(renderer.domElement);
 +
    var radius = 50, segments = 16, rings = 16;
-
sphere = new THREE.Mesh(
+
    sphere = new THREE.Mesh(
-
new THREE.SphereGeometry(radius,
+
        new THREE.SphereGeometry(radius,
-
segments,
+
            segments,
-
rings),
+
            rings),
-
sphereMaterial
+
        sphereMaterial
-
);
+
    );
-
sphere.position.x = 50;
+
    sphere.position.x = 50;
-
sphere.position.y = 50;
+
    sphere.position.y = 50;
-
sphere.position.z = 50;
+
    sphere.position.z = 50;
-
particleSystem = new THREE.ParticleSystem(
+
-
    particles,
+
-
    pointMaterial);
+
// add it to the scene
// add it to the scene
-
+
    plot_mesh = [];
-
plot_mesh = new THREE.Mesh(
+
    plot_points = [];
-
data_3d[0],
+
for(var i = 0; i < data_3d.length; ++i)
-
plotMaterial
+
{
-
);
+
plot_mesh.push(new THREE.Mesh(data_3d[i], plotMaterial));
-
plot_mesh.doubleSided = true;
+
plot_mesh[i].doubleSided = true;
 +
 
 +
plot_points.push(new THREE.ParticleSystem(
 +
    particles[i],
 +
    pointMaterial));
 +
}
 +
plot_obj = new THREE.Object3D();
 +
plot_obj.rotation.z = -Math.PI/2;
 +
plot_obj.scale.x = -1;
//plot_mesh.addChild(sphere);
//plot_mesh.addChild(sphere);
-
origin = new THREE.Vertex(new THREE.Vector3(0,0,0));
 
-
axisgeom = new THREE.Geometry();
+
    axisgeom = new THREE.Geometry();
-
axisgeom.vertices.push(origin);
+
    axisgeom.vertices.push(origin);
-
axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(100,0,0)));
+
    axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(100,0,0)));
-
axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(98, 1, 0)));
+
    axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(98, 1, 0)));
-
axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(98, -1, 0)));
+
    axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(98, -1, 0)));
-
axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(100, 0, 0)));
+
    axisgeom.vertices.push(new THREE.Vertex(new THREE.Vector3(100, 0, 0)));
-
xaxis = new THREE.Line(
+
    xaxis = new THREE.Line(
-
axisgeom,
+
        axisgeom,
-
axisMat
+
        axisMat
-
);
+
    );
-
yaxis = new THREE.Line(
+
    yaxis = new THREE.Line(
-
axisgeom,
+
        axisgeom,
-
axisMat
+
        axisMat
-
);
+
    );
-
yaxis.rotation.z = 90*Math.PI/180;
+
    yaxis.rotation.z = 90*Math.PI/180;
-
zaxis = new THREE.Line(
+
    zaxis = new THREE.Line(
-
axisgeom,
+
        axisgeom,
-
axisMat
+
        axisMat
-
);
+
    );
-
xaxis.addChild(xaxislabel);
+
    scene.addChild(xaxislabel);
-
yaxis.addChild(yaxislabel);
+
    scene.addChild(yaxislabel);
-
zaxis.addChild(zaxislabel);
+
    scene.addChild(zaxislabel);
-
zaxis.rotation.y = -90*Math.PI/180;
+
-
plot_mesh.position.x = -50;
+
    zaxis.rotation.y = -90*Math.PI/180;
-
plot_mesh.position.z = -50;
+
-
plot_mesh.position.y = -50;
+
-
zaxis.position.x = -50;
+
    plot_obj.position.x = -50;
-
zaxis.position.z = -50;
+
    plot_obj.position.z = -50;
-
zaxis.position.y = -50;
+
    plot_obj.position.y = -50;
-
xaxis.position.x = -50;
+
    zaxis.position.x = -50;
-
xaxis.position.z = -50;
+
    zaxis.position.z = -50;
-
xaxis.position.y = -50;
+
    zaxis.position.y = -50;
-
yaxis.position.x = -50;
+
    xaxis.position.x = -50;
-
yaxis.position.z = -50;
+
    xaxis.position.z = -50;
-
yaxis.position.y = -50;
+
    xaxis.position.y = -50;
-
origin_camera = new THREE.Object3D();
+
    yaxis.position.x = -50;
-
origin_object = new THREE.Object3D();
+
    yaxis.position.z = -50;
-
origin_camera.addChild(origin_object);
+
    yaxis.position.y = -50;
-
origin_object.addChild(plot_mesh);
+
 
-
plot_mesh.addChild(particleSystem);
+
//plot_obj.addChild(particleSystem);
 +
 
 +
 
 +
    scene.addChild(xaxis);
 +
    scene.addChild(yaxis);
 +
    scene.addChild(zaxis);
 +
scene.addChild(plot_obj);
 +
//  origin_object.addChild(sphere);
 +
 
 +
 
 +
    //Grid
 +
    var gridlinegeom = new THREE.Geometry();
 +
    gridlinegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(0,0,0)));
 +
    gridlinegeom.vertices.push(new THREE.Vertex(new THREE.Vector3(100,0,0)));
 +
   
 +
for(var i=1; i <= 5; i++)
 +
{
 +
var gridline = new THREE.Line(gridlinegeom, axisMat);
 +
gridline.position.y = i/5*100-50;
 +
gridline.position.x = -50;
 +
gridline.position.z = -50;
 +
scene.addChild(gridline);
 +
 
 +
 +
 +
var gridline = new THREE.Line(gridlinegeom, axisMat);
 +
gridline.position.x = i/5*100-50;
 +
gridline.position.y = -50;
 +
gridline.position.z = -50;
 +
gridline.rotation.z = Math.PI/2;
 +
scene.addChild(gridline);
 +
}
 +
yticklabels = [];
 +
xticklabels = [];
 +
for(var i=1; i <= 5; i++)
 +
{
 +
    var x = document.createElement("canvas");
 +
    var xc = x.getContext("2d");
 +
    x.width = 40;
 +
    x.height = 40;
 +
    xc.fillStyle = "#ffffff";
 +
    xc.font = "12pt arial";
 +
    xc.textBaseline = "top";
 +
    xc.fillText(i/5*axisdimensions[1], 10, 0);
 +
 
 +
    var xm = new THREE.MeshBasicMaterial({
 +
    map: new THREE.Texture(x)
 +
    });
 +
    xm.map.needsUpdate = true;
 +
    var xtick = new THREE.Mesh(new THREE.PlaneGeometry(13/ASPECT, 13, 2, 2), xm);
 +
    xtick.position.y = i/5*100-50;
 +
    xtick.position.x = -50;
 +
    xtick.position.z = -58;
 +
    xtick.rotation.x = Math.PI/2;
 +
    xtick.doubleSided = true;
 +
    xtick.updateMatrix();
 +
    scene.addChild(xtick);
 +
 
 +
    var x = document.createElement("canvas");
 +
    var xc = x.getContext("2d");
 +
    x.width = 80;
 +
    x.height = 40;
 +
    xc.fillStyle = "#ffffff";
 +
    xc.font = "12pt arial";
 +
    xc.textBaseline = "top";
 +
    xc.fillText((i/5*axisdimensions[3]).toFixed(4), 10, 0);
 +
 
 +
    var xm = new THREE.MeshBasicMaterial({
 +
    map: new THREE.Texture(x)
 +
    });
 +
    xm.map.needsUpdate = true;
 +
    var ytick = new THREE.Mesh(new THREE.PlaneGeometry(26/ASPECT, 13, 2, 2), xm);
 +
    ytick.position.x = i/5*100-50;
 +
    ytick.position.y = -50;
 +
    ytick.position.z = -58;
 +
    ytick.rotation.x = Math.PI/2;
 +
    ytick.doubleSided = true;
 +
    ytick.updateMatrix();
 +
    scene.addChild(ytick);
 +
 
 +
xticklabels.push(xtick);
 +
yticklabels.push(ytick);
 +
}
-
origin_object.rotation.z = Math.PI;
+
var particle = new THREE.Particle(pointMaterial);
-
//origin_object.rotation.y = 0*Math.PI/180;
+
-
origin_object.rotation.x = -Math.PI/2;
+
-
origin_object.scale.x = -1;
 
-
origin_object.addChild(xaxis);
+
    renderer.render(scene, camera);
-
origin_object.addChild(yaxis);
+
-
origin_object.addChild(zaxis);
+
-
// origin_object.addChild(sphere);
+
-
scene.addChild(origin_camera);
+
-
renderer.render(scene, camera);
+
Line 785: Line 1,081:
     -ms-transform: rotate(-90deg);
     -ms-transform: rotate(-90deg);
top:179px;
top:179px;
-
left:-33px;
+
left:-40px;
 +
position:absolute;
 +
}
 +
 
 +
.xaxis {
 +
bottom:15px;
position:absolute;
position:absolute;
 +
left:320px;
}
}
</style>
</style>
</html>
</html>

Latest revision as of 03:39, 29 September 2011

Retrieved from "http://2011.igem.org/Template:Team:UC_Davis/MutantWidget"