Team:Glasgow/BiofilmResults

From 2011.igem.org

(Difference between revisions)
 
(5 intermediate revisions not shown)
Line 2: Line 2:
<html>
<html>
<h1>Results</h1>
<h1>Results</h1>
 +
<h6><a href="https://2011.igem.org/Team:Glasgow/Biofilm">Back to Biofilms</a></h6>
 +
<h6><a href="https://2011.igem.org/Team:Glasgow/Results">Back to Results</a></h6>
 +
<p>The images below show a selection of stages of biofilm formation. Starting with Image 1 showing a lab strain of <i>E.coli</i>that has no fimbriae, and is not forming a biofilm.</p>
<p>The images below show a selection of stages of biofilm formation. Starting with Image 1 showing a lab strain of <i>E.coli</i>that has no fimbriae, and is not forming a biofilm.</p>
<p>Image 2 shows an EM of <i>E.coli</i> Nissle 1917 in the early stages of biofilm formation. The fimbriae that allow the cells to cling to each other are clearly visible.</p>
<p>Image 2 shows an EM of <i>E.coli</i> Nissle 1917 in the early stages of biofilm formation. The fimbriae that allow the cells to cling to each other are clearly visible.</p>
Line 33: Line 36:
</div>
</div>
</br>
</br>
 +
<p>The diagrams below show two 24-hour RFP Nissle biofilms compared to non-transformed Nissle and Nissle transformed with the puC19 vector. They show the distinct red fluorescence of RFP, as well as what appears to be innate green fluorescence of Nissle. Due to this property of <i>E. coli</i> Nissle, using GFP or YFP is not recommended. <p>
 +
<p>More details on these diagrams can be found in the lab book section.</p>
 +
<table>
<table>
<tr>
<tr>
Line 40: Line 46:
</td>
</td>
</tr>
</tr>
 +
<tr>
 +
<td>
 +
<p>
 +
<tr>
<td>
<td>
<img src="http://farm7.static.flickr.com/6175/6170690387_75d453a871_z.jpg">
<img src="http://farm7.static.flickr.com/6175/6170690387_75d453a871_z.jpg">
Line 48: Line 58:
<h2>Summary</h2>
<h2>Summary</h2>
-
<p>- New Chassis</p>
+
<p>We have inserted a new chassis into the registry with E. coli Nissle 1917 which we have also proven to be fully transformable at a rate of 300 colonies per microgram of DNA. We have supplied links to literature which details that the organism has been proved to be safe for use in humans.</p>
-
<p>-Transformable</p>
+
 
-
<p>- Forms biofilms</p>
+
<p>Nissle 1917 has been shown to be backwardly compatible with a number of pre-existing biobricks, for example the RFP construct J04450 and the cells did not require a shuttle vector or codon optomisation before transformation. </p>
-
<p>- Non-pathogenic and compatible with majority of biobricks</p>
+
<p>Nissle produces 600 colonies per microgram of DNA in chemical tranformation </p>
-
<p>-No shuttle vector necessary</p>
+
<p>Nissle produces 1250 colonies per microgram of DNA in electroporation</p>
-
<p>-Time series shows that biofilm grows at similar speed to planktonic cells</p>
+
<p>We have also demonstrated that this chassis forms biofilms readily and carried out a time series experiment which shows that biofilm grows at similar speed to planktonic cell growth. <b>For these reasons we feel that the Nissle 1917 E. coli strain is well suited to biofilm investigations with BioBricks.</b></p>
-
<p><b>Well suited for biofilm investigation, especially when intending to transform the biofilm</b></p>
+

Latest revision as of 04:10, 22 September 2011

Results

Back to Biofilms
Back to Results

The images below show a selection of stages of biofilm formation. Starting with Image 1 showing a lab strain of E.colithat has no fimbriae, and is not forming a biofilm.

Image 2 shows an EM of E.coli Nissle 1917 in the early stages of biofilm formation. The fimbriae that allow the cells to cling to each other are clearly visible.

Image 3 shows a Nissle biofilm in the later stages of formation, with the cells densely packed and the extracellular matrix that holds them together showing.

Image 1: 15,000x EM of E.coli for comparison.
No fimbriae or EPS is visible.
(courtesy of Rocky Mountain Laboratories)

Image 2: 10,000x SEM image of Nissle
showing the fimbriae

Image 3: SEM image of Nissle biofilm
showing the extracellular matrix

Image 4: 1000x EM of P. aeruginosa biofilm,
showing its densely packed structure
(courtesy of Dan Walker, University of Glasgow)


The diagrams below show two 24-hour RFP Nissle biofilms compared to non-transformed Nissle and Nissle transformed with the puC19 vector. They show the distinct red fluorescence of RFP, as well as what appears to be innate green fluorescence of Nissle. Due to this property of E. coli Nissle, using GFP or YFP is not recommended.

More details on these diagrams can be found in the lab book section.

Figure 1: Comparison of RFP E.coli Nissle biofilms to untransformed E.coli Nissle bioflims under light microscope and under excitatory and non-excitatory wavelengths

Figure 2: Comparison of RFP E.coli Nissle biofilms to puC19 E.coli Nissle biofilms under light microscope and under excitatory and non-excitatory wavelengths

Summary

We have inserted a new chassis into the registry with E. coli Nissle 1917 which we have also proven to be fully transformable at a rate of 300 colonies per microgram of DNA. We have supplied links to literature which details that the organism has been proved to be safe for use in humans.

Nissle 1917 has been shown to be backwardly compatible with a number of pre-existing biobricks, for example the RFP construct J04450 and the cells did not require a shuttle vector or codon optomisation before transformation.

Nissle produces 600 colonies per microgram of DNA in chemical tranformation

Nissle produces 1250 colonies per microgram of DNA in electroporation

We have also demonstrated that this chassis forms biofilms readily and carried out a time series experiment which shows that biofilm grows at similar speed to planktonic cell growth. For these reasons we feel that the Nissle 1917 E. coli strain is well suited to biofilm investigations with BioBricks.