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Team:Glasgow/Biofilm
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<h1>Biofilms</h1> | <h1>Biofilms</h1> | ||
| - | <p>Bacteria are found in the environment in two forms: planktonic (single) cells and in diverse multi-species communities called biofilms. Although most lab strains of bacteria do not form biofilms in natural, industrial or medical environments this is the most common way that they | + | <a name="top"></a><h6> Contents</h6> |
| + | <ul> <a href="#stages">Stages of Biofilm Developement</a></ul> | ||
| + | <ul> <a href="#significance">Significance of Biofilms</a></ul> | ||
| + | <ul> <a href="#discoli">Biofilms in DISColi</a></ul> | ||
| + | <ul> <a href="#ref">References</a></ul> | ||
| + | |||
| + | <h6>Biofilm forming organisms</h6> | ||
| + | <ul> <a href="https://2011.igem.org/Team:Glasgow/Biofilm/P._aeruginosa">Pseudomonas aeruginosa</a></ul> | ||
| + | <ul> <a href="https://2011.igem.org/Team:Glasgow/Biofilm/Nissle">E. coli Nissle 1917</a></ul> | ||
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| + | <h6> <a href="https://2011.igem.org/Team:Glasgow/BiofilmResults">Results obtained from experimentation</a></h6> | ||
| + | |||
| + | <h6><a href="https://2011.igem.org/Team:Glasgow/Results">Back to Results</a></h6> | ||
| + | |||
| + | |||
| + | <p>Bacteria are found in the environment in two forms: planktonic (single) cells and in diverse multi-species communities called biofilms. Although most lab strains of bacteria do not form biofilms, in natural, industrial or medical environments this is the most common way that they live. Biofilms form on surfaces, generally at an air-water interface, and have complex 3D structures that consist of microbes and a mixture of exo-polysaccharides and DNA excreted by some members of the biofilm.</p> | ||
<table> | <table> | ||
<tr> | <tr> | ||
<td> | <td> | ||
| - | <h2>Stages of Biofilm Development</h2> | + | <a name="stages"></a><h2>Stages of Biofilm Development</h2> |
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| + | <p>To start the initial formation of a biofilm, founder microbes attach to a surface weakly through van der Waal forces and as long as they're not sweep away too quickly they attach irreversibly using fimbriae or pili that cover the outer surface of the cell. When they have attached they start to excrete a mixture of exo-polysaccharides and DNA called the extra-cellular matrix (ECM) which aids attachment to the surface and give protection from the surrounding environmental conditions. This “proto-biofilm” now grows in size two way: though the founder microbe dividing as well as other microbes joining the biofilm from the surrounding environment. The microbes that join the biofilm aren’t necessarily the same species of bacteria as the founder microbe, they might not even be bacteria they could be other microbes like fungi and protozoa. Some of the microbes that join biofilms do not produce exo-polysaccharides or secrete DNA and might not have the fimbriae that allow a founder colony to bind to a surface, but these structures are not required to bind to the sticky extra-cellular matrix (ECM) of the biofilm. The community grows in size and at this point becomes 10 to 1000 times more resistant to antibiotic treatment (Olson, ME et al, 2002) and can act as a reservoir for chronic reinfection. When the biofilm is large enough, areas of the ECM are degraded with enzymes which leads to dispersal of a portion of the biofilm, allowing cells to disperse and establish more biofilms.</p> | ||
| + | <h6> <a href="#top">Return to top</a></h6> | ||
| - | |||
</td> | </td> | ||
<td> | <td> | ||
<img src="https://static.igem.org/mediawiki/2011/1/17/Biofilmdevelopment.jpg" /a> | <img src="https://static.igem.org/mediawiki/2011/1/17/Biofilmdevelopment.jpg" /a> | ||
</br> | </br> | ||
| - | <b>Figure 1: Stages of Biofilm Development.</b> This diagram is a cartoon of the 5 stages of biofilm development: initial attachment, irreversible attachment, maturation 1, maturation 2 and finally dispsersal. Under the cartoon are 5 electron micrographs showing what the biofilm looks like at each stage. Image by D. Davis form Monroe, D "Looking for Chinks in the Armor of Bacterial Biofilms" PLoS Biol, Vol 5, issue 11. | + | <b>Figure 1: Stages of Biofilm Development.</b> This diagram is a cartoon of the 5 stages of biofilm development: initial attachment, irreversible attachment, maturation 1, maturation 2 and finally dispsersal. Under the cartoon are 5 electron micrographs showing what the biofilm actually looks like at each stage. Image by D. Davis form Monroe, D "Looking for Chinks in the Armor of Bacterial Biofilms" PLoS Biol, Vol 5, issue 11. |
</td> | </td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
| - | <h2>Significance of Biofilms</h2> | + | <a name="significance"></a><h2>Significance of Biofilms</h2> |
| - | Biofilms are a huge problem both medically and industrially. It has been estimated that 65% of human nosocomial infections such as <i>Clostridium difficile</i> are caused biofilms. This combined with the | + | Biofilms are a huge problem both medically and industrially. It has been estimated that 65% of human nosocomial infections such as <i>Clostridium difficile</i> are caused biofilms. This combined with the large increase in antibiotic resistance results in a huge loss in human life and in healthcare costs.(Olson et al, 2002)</br></br> |
| + | |||
| + | The oil industry is a prime example of an industry affected biofilms. Biofilm forms on the surface of pipes and can potentially cause blockages. Further to this biofilms provide a niche for sulfate reducing bacteria to grow which turn reduce sulphate rich sea-water into hydrogen sulphate. This compound is toxic, corrodes the pipes and taints oil and gas which reduces its worth causing huge financial damage. (Schwermer, CU et al, 2008) | ||
| + | <h6> <a href="#top">Return to top</a></h6> | ||
| - | <h2>Biofilms in DISColi</h2> | + | <a name="discoli"></a><h2>Biofilms in DISColi</h2> |
<p>Unfortuntely the available lab strains of <i>E. coli</i> have been selected against biofilm formation, so none of them were suitable as a chassis.</p> | <p>Unfortuntely the available lab strains of <i>E. coli</i> have been selected against biofilm formation, so none of them were suitable as a chassis.</p> | ||
| - | <p>However,<i>Pseudomonas aeruginosa</i> is the organism most commonly used for research into biofilms. It was the obvious choice to use <i>P. aeruginosa</i> in the DISColi project to test the basic properties of biofilms. <p> | + | <p>However, <i>Pseudomonas aeruginosa</i> is the organism most commonly used for research into biofilms. It was the obvious choice to use <i>P. aeruginosa</i> in the DISColi project to test the basic properties of biofilms. <p> |
<p> <b>Continue to <a href="https://2011.igem.org/Team:Glasgow/Biofilm/P._aeruginosa"> <i>P. aeruginosa</i></a></b> | <p> <b>Continue to <a href="https://2011.igem.org/Team:Glasgow/Biofilm/P._aeruginosa"> <i>P. aeruginosa</i></a></b> | ||
| + | <h6> <a href="#top">Return to top</a></h6> | ||
| - | <h2>References</h2> | + | <a name="ref"></a><h2>References</h2> |
Monroe, D "Looking for Chinks in the Armor of Bacterial Biofilms" PLoS Biol, Vol 5, issue 11. | Monroe, D "Looking for Chinks in the Armor of Bacterial Biofilms" PLoS Biol, Vol 5, issue 11. | ||
</br> | </br> | ||
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Schwermer, CU et al "Impact of Nitrate on the Structure and Function of Bacterial Biofilm Communities in Pipelines Used for Injection of Seawater into Oil Fields", Appl Environ Microbiol., 2008, 74(9): 2841–2851. | Schwermer, CU et al "Impact of Nitrate on the Structure and Function of Bacterial Biofilm Communities in Pipelines Used for Injection of Seawater into Oil Fields", Appl Environ Microbiol., 2008, 74(9): 2841–2851. | ||
| + | <h6> <a href="#top">Return to top</a></h6> | ||
</html> | </html> | ||
Latest revision as of 02:39, 22 September 2011
Biofilms
Contents
Biofilm forming organisms
Results obtained from experimentation
Back to Results
Bacteria are found in the environment in two forms: planktonic (single) cells and in diverse multi-species communities called biofilms. Although most lab strains of bacteria do not form biofilms, in natural, industrial or medical environments this is the most common way that they live. Biofilms form on surfaces, generally at an air-water interface, and have complex 3D structures that consist of microbes and a mixture of exo-polysaccharides and DNA excreted by some members of the biofilm.
Stages of Biofilm DevelopmentTo start the initial formation of a biofilm, founder microbes attach to a surface weakly through van der Waal forces and as long as they're not sweep away too quickly they attach irreversibly using fimbriae or pili that cover the outer surface of the cell. When they have attached they start to excrete a mixture of exo-polysaccharides and DNA called the extra-cellular matrix (ECM) which aids attachment to the surface and give protection from the surrounding environmental conditions. This “proto-biofilm” now grows in size two way: though the founder microbe dividing as well as other microbes joining the biofilm from the surrounding environment. The microbes that join the biofilm aren’t necessarily the same species of bacteria as the founder microbe, they might not even be bacteria they could be other microbes like fungi and protozoa. Some of the microbes that join biofilms do not produce exo-polysaccharides or secrete DNA and might not have the fimbriae that allow a founder colony to bind to a surface, but these structures are not required to bind to the sticky extra-cellular matrix (ECM) of the biofilm. The community grows in size and at this point becomes 10 to 1000 times more resistant to antibiotic treatment (Olson, ME et al, 2002) and can act as a reservoir for chronic reinfection. When the biofilm is large enough, areas of the ECM are degraded with enzymes which leads to dispersal of a portion of the biofilm, allowing cells to disperse and establish more biofilms. Return to top |
Figure 1: Stages of Biofilm Development. This diagram is a cartoon of the 5 stages of biofilm development: initial attachment, irreversible attachment, maturation 1, maturation 2 and finally dispsersal. Under the cartoon are 5 electron micrographs showing what the biofilm actually looks like at each stage. Image by D. Davis form Monroe, D "Looking for Chinks in the Armor of Bacterial Biofilms" PLoS Biol, Vol 5, issue 11.
|
Significance of Biofilms
Biofilms are a huge problem both medically and industrially. It has been estimated that 65% of human nosocomial infections such as Clostridium difficile are caused biofilms. This combined with the large increase in antibiotic resistance results in a huge loss in human life and in healthcare costs.(Olson et al, 2002) The oil industry is a prime example of an industry affected biofilms. Biofilm forms on the surface of pipes and can potentially cause blockages. Further to this biofilms provide a niche for sulfate reducing bacteria to grow which turn reduce sulphate rich sea-water into hydrogen sulphate. This compound is toxic, corrodes the pipes and taints oil and gas which reduces its worth causing huge financial damage. (Schwermer, CU et al, 2008)Return to top
Biofilms in DISColi
Unfortuntely the available lab strains of E. coli have been selected against biofilm formation, so none of them were suitable as a chassis.
However, Pseudomonas aeruginosa is the organism most commonly used for research into biofilms. It was the obvious choice to use P. aeruginosa in the DISColi project to test the basic properties of biofilms.
Continue to P. aeruginosa
