Team:Bilkent UNAM Turkey/Team

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Turgay Tekinay
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Asst.Prof. Tekinay
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TEAM
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      Kalyoncu
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TEAM 2
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      Topal
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TEAM 3
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      Ozkan
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LAB WORKS
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      Gumuscu
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FUN PART
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      Gunes
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BIOBRICK PARTS
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      Olmez
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ATTRIBUTIONS
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      Degirmenci
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Turgay TEKİNAY<br>
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<br>
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Ph.D. Columbia University<br>
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<br>
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Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University  Bilkent, Ankara 06800<br>
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E-mail: ttekinay(at)unam.bilkent.edu.tr <br>
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Phone:            +90-312-290 3573  <br>   
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Fax: +90-312-266 4365 <br>
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<p><b style=3D'mso-bidi-font-weight:normal'><span lang=3DTR>Biodegradation of TNT and TNT derivatives by <i>nfsI</i>-transfected <i>Chlamydomonas Reinhardtii</i><o:p></o:p></span></b></p>
 
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<p><b style=3D'mso-bidi-font-weight:normal'><span lang=3DTR>Abstract<o:p></
 
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o:p></span></b></p>
 
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<p><span lang=3DTR>We aim for the genetic modification of the unicellular microalga <i
 
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style=3D'mso-bidi-font-style:normal'>Chlamydomonas reinhardtii</i>  by introducing the
 
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<i style=3D'mso-bidi-font-style:normal'>nfsI</i> gene belonging to the bacterium <i
 
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style=3D'mso-bidi-font-style:normal'>Enterobacter cloacae</i> in order to
 
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investigate how nitroreductase expressing-microalgae respond to trinitrotoluene
 
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(TNT) exposure. Our experimental design is as follows:
 
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firstly, obtain a synthetic gene of <i style=3D'mso-bidi-font-style:normal'>nfsI</i> with flanking prefix and suffix of standard Biobricks, and ligate this insert to pRbcBRL, a vector with
 
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appropriate expression and selection system for <i style=3D'mso-bidi-font-style:
 
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normal'>Chlamydomonas reinhardtii</i> and obtain pRbcnfsI. Then, <i style=3D'mso-bidi-font-style:normal'>Chlamydomonas reinhardtii</i> will be transfected with the with the designed plasmid. The transfected algae will then be grown in presence of TNT and/or TNT derivatives and the effectiveness of nitroreductase activity on
 
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biological degradation of TNT will be investigated.<b style=3D'mso-bidi-font-weight:normal'><o:p
 
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I’m Ebuzer, graduated from the Middle East Technical University and I’ am starting my PhD in UNAM. My hobbies consist of football, squash, Dota, watching movies, pen spinning. My favourites are shawshank redemption (movie), Game of thrones (book), Dexter (series). At last I am really interested in biodiesel production and algal systems. This year we got a grateful team, working hard and getting fun are our basic rules.
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As of March<br>
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Ebuzer KALYONCU<br><br>
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Senior Student of Middle East Technical University, Molecular Biology and Genetics<br>
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Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University  Bilkent, Ankara 06800<br>
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E-mail:ebuzer.kalyoncu(at)bilkent.edu.tr<br>
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Phone:            +90-312-290 3544<br><br>
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I’m Ebuzer, recently graduated from the Middle East Technical University and I’ am now starting my PhD in UNAM. My hobbies <br>consist of football, squash, Dota, watching movies, pen spinning. My favourites are shawshank redemption for movie,<br> Game of thrones for literature, Dexter for series. At last I am really interested in biodiesel production and <br>algal systems. This year we have a great team, being able to work hard and getting fun are our basic rules.<br>
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I’m Ufuk, sophomores of Bilkent University, Molecular Biology and Genetics Department. Playing squash and Dota are my favourite activities, if I win. Fantastic books are fascinates me. First book, I read was One Thousand and One Nights. In iGEM; I like its fun and working style. Everything happens together. I like to watch movies especially with friends. This is my first iGEM experience, I am thankful to my team members for sharing their fun.
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As of March<br>
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I am Tarkan and one of the member of the Bilkent – UNAM – Turkey team. I love watching and playing sports especially football and basketball just as usual Turkish guys do. I love dancing but generally too shy to start doing it in public. I like talking and meeting new people. Telling jokes and amuzing people is my style of communication, because that is the best way of telling your good intentions towards others. I participate volunteering action a lot in the campus and that actions target poor, rural and disabled children. I love them and enjoy spending time with. So, that is it for me now.
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Ahmet Emin TOPAL<br><br>
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</li>
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<li>
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Graduate Student at Bilkent University<br>
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It is Burcu from Bilkent University, Institute of Material Science and Nanotechnology. I am very proud of being a member of Bilkent UNAM Turkey team because I think; here we reflect the real team spirit. Here is a brief information about me: I spent every minute of me by listening music! Nothing makes me happy like talking with people. I do love sports activities if I can bring down my laziness. Reading books is not for me but reading articles has become my pleasure for a long time. As many members of my team, it is my first IGEM participation. I hope we will rock the IGEM world with our endless energy and success!
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Address: UNAM, Institute of Materials Science and Nanotechnology Bilkent University, Ankara, 06800<br>
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</li>
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E-mail: ahmet.topal@bilkent.edu.tr<br>
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I am Ahmet Emin, just graduated from Molecular Biology and Genetics at Bilkent University in Ankara, Turkey. I am now a graduate student in Laboratory of Sustainable Technologies in UNAM, Institute of Material Science and Nanotechnology at Bilkent University. My current research interests are sustainable and environmental biotechnology, microbioengineering and vaccine science in immunology.
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Phone:            +90-312-290 3544<br><br>
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<li>
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I am Ahmet Emin, recently graduated from Molecular Biology and Genetics at Bilkent University in Ankara, Turkey. <br>I am now pursuing my career as a graduate student in Laboratory of Sustainable Technologies in UNAM, Institute of Material Science and <br>Nanotechnology at Bilkent University. My research interests are sustainable and environmental biotechnology, microbioengineering and vaccine science in immunology.
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As of March<br>
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Alper Devrim Ozkan<br><br>
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<td><img src="https://static.igem.org/mediawiki/2011/e/ee/01089.jpg" width="440" height="200"></td>
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<td>
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Senior Student of Bilkent University, Molecular Biology and Genetics<br>
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<p>
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Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University  Bilkent, Ankara 06800<br>
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In this summer; we learned about iGEM, how it works, what the biggest part of competition is and how we can win a medallion.<p>
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E-mail:d_ozkan(at)ug.bilkent.edu.tr<br>
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When we were newbie, we organized a lot of meeting to find out our main project than we got idea for improving human welfare so we choose an idea from brainstorm results. We searched to get a gene to work on. As a result; lab works has began.
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Phone:            +90-312-290 3544<br><br>
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We added our protocols which are helpful to transform C.reinhartii and E.coli. Basic cloning protocols also added our protocol page. Experiments and safety questions also available from link at the top section.
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Lazy excuse of a doctoral student who spends all his time reading any research paper except those about the topic<br> he’s ought to study. Quite knowledgeable about entomology, marine biology and world mythology, can read hieroglyphics. <br>Still a worthless researcher because he’s supposed to do microbiology work. Special skills <br>include using his rubber gloves as a sling to shoot.<br>
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</p>
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Eppendorf tubes with remarkable accuracy and reading while walking on difficult terrain (our faculty is <br>on top of a hill and surrounded by a forest for some reason, there's a lot of difficult terrain here.)
</td>
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As of March<br>
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Burcu GUMUSCU<br><br>
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BSc. Hacettepe University, Biology<br>
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Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University  Bilkent, Ankara 06800<br>
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E-mail:  gumuscu(at)bilkent.edu.tr<br>
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Phone:            +90-312-290 3544  <br><br>   
 +
It is Burcu from Bilkent University, Institute of Material Science and Nanotechnology. I am very proud of being a <br>member of Bilkent UNAM Turkey team because I think; here we reflect the real team spirit. Here is a brief <br>information about me: I spent every minute of me by listening music! Nothing makes me happy like talking with <br>people. I do love sports activities if I can bring down my laziness. Reading books is not for me but reading <br>articles has become my pleasure for a long time. As many members of my team, it is my first IGEM participation.<br> I hope we will rock the IGEM world with our endless energy and success!
 +
</td>
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<table style="background:transparent !important"><tr><td><img src="https://static.igem.org/mediawiki/2011/4/42/Me.jpg" width="300" height="356"></td><td>
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As of March<br>
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Sinan GUNES<br><br>
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Senior Student, Bilkent University, Electrical and Electronics Engineering<br>
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Address: 78.Dorm, 146. Room, Bilkent University Bilkent, Ankara 06800<br>
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E-mail:gunes.sinan(at)gmail.com<br>
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Web: http://www.sinangüneş.com.tr<br>
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Phone:            +90-312-290 7239<br><br>
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The picture you look represents me. And that is all. <br>
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By the way, I like playing computer games such as <a href="http://lmgtfy.com/?q=DotA">DotA</a>, <a href="http://lmgtfy.com/?q=TF2">TF2</a> and <a href="http://lmgtfy.com/?q=AoE2">AoE2</a> and also -while playing- <br> I love characterizing other players. In order to do so, I may sometimes change, replace or insert some DNA into computer games, <br> I mean the source code. Some calls this cheating, but I swear it is not. <br>:)
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<p> IGEM Project is our number one priority. As we worked really hard for our project it is important for us to make our dreams come true which is taking a gold medal. Questioning different items like experiment time, materials and methods and the efficiency of the experiments improved our skills and we started to look as a scientist to problems we faced. There were lots of challenging parts and sometimes we thought to quit but we listened to “Eye of The Tiger” and we did not give up from our experiments we delayed them yes, but we never gave up. <p>
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As of March<br>Tolga Tarkan OLMEZ
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IGEM team- meet-up was a great opportunity for us to communicate with the other groups, understood their projects and share our ideas. As we had a chance for an interview with Anatolia Agency, we also used media power to get attention to our project, iGEM and the importance of synthetic biology. <p>
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<table style="background:transparent !important"><tr><td><img src="https://static.igem.org/mediawiki/2011/e/eb/DSC00707.JPG" width="360" height="270"></td><td>
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Apart from that we did not forget having fun apart from our lab. As we planned a BBQ party, it was also a great chance for us to relax and gain some energy for our experiments, I did not even mention about the delicious foods and how joyful was our activities. Also like in iGEM team meeting up, we had a chance to introduce our project and main aim to other scientists and researchers in different areas.<p>
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Links at above lead you to specific event and its photos suppose to be at that link. If not, look at gallery link.
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Thanks and get great time.<p>
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Senior student from Bilkent University, Molecular Biology and Genetics<br>
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Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University  Bilkent, Ankara 06800<br>
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E-mail:tolgatarkanolmez(at)gmail.com<br>
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Phone:            +90-312-290 3544<br><br>
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I am Tarkan and one of the member of the Bilkent – UNAM – Turkey team. I love watching and playing sports especially<br> football and basketball just as usual Turkish guys do. I love dancing but generally too shy to start<br> doing it in public. I like talking and meeting new people. Telling jokes and amusing people is my style of<br> communication, because that is the best way of telling your good intentions towards others. I participate <br>volunteering action a lot in the campus which target poor, rural and disabled children. I love them<br> and enjoy spending time with. So, that is it for me now.
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As of March<br>      
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Ufuk DEGİRMENCİ<br><br>
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<a href="http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2011&group=Bilkent_UNAM_Turkey">Addded genes</a>
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Sophomore Student, Bilkent University, Molecular Biology and Genetics<br>
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Address:61.Dorm, 503.Room, Bilkent University Bilkent, Ankara 06800<br>
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E-mail:degirmenci(at)ug.bilkent.edu.tr<br>
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Phone:            +90-312-290 4277<br><br>
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I’m Ufuk, sophomore student of Bilkent University, Molecular Biology and Genetics Department. Playing squash and Dota are my favourite activities, if I win. Fantastic books fascinate me. First book i read was "One Thousand and One Nights". In IGEM; I like its fun and working style. Everything happens together. I like watching movies when it is with friends. This is my first time being in a research project team, so i am really thankful to my team members for sharing their experience and joy.
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Latest revision as of 04:03, 22 September 2011

 
Asst.Prof. Tekinay Kalyoncu Topal Ozkan Gumuscu Gunes Olmez Degirmenci
  • Turgay TEKİNAY

    Ph.D. Columbia University

    Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University Bilkent, Ankara 06800
    E-mail: ttekinay(at)unam.bilkent.edu.tr
    Phone: +90-312-290 3573
    Fax: +90-312-266 4365
  • As of March
    Ebuzer KALYONCU

    Senior Student of Middle East Technical University, Molecular Biology and Genetics
    Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University Bilkent, Ankara 06800
    E-mail:ebuzer.kalyoncu(at)bilkent.edu.tr
    Phone: +90-312-290 3544

    I’m Ebuzer, recently graduated from the Middle East Technical University and I’ am now starting my PhD in UNAM. My hobbies
    consist of football, squash, Dota, watching movies, pen spinning. My favourites are shawshank redemption for movie,
    Game of thrones for literature, Dexter for series. At last I am really interested in biodiesel production and
    algal systems. This year we have a great team, being able to work hard and getting fun are our basic rules.
    As of March
    Ahmet Emin TOPAL

    Graduate Student at Bilkent University
    Address: UNAM, Institute of Materials Science and Nanotechnology Bilkent University, Ankara, 06800
    E-mail: ahmet.topal@bilkent.edu.tr
    Phone: +90-312-290 3544

    I am Ahmet Emin, recently graduated from Molecular Biology and Genetics at Bilkent University in Ankara, Turkey.
    I am now pursuing my career as a graduate student in Laboratory of Sustainable Technologies in UNAM, Institute of Material Science and
    Nanotechnology at Bilkent University. My research interests are sustainable and environmental biotechnology, microbioengineering and vaccine science in immunology.
    As of March
    Alper Devrim Ozkan

    Senior Student of Bilkent University, Molecular Biology and Genetics
    Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University Bilkent, Ankara 06800
    E-mail:d_ozkan(at)ug.bilkent.edu.tr
    Phone: +90-312-290 3544

    Lazy excuse of a doctoral student who spends all his time reading any research paper except those about the topic
    he’s ought to study. Quite knowledgeable about entomology, marine biology and world mythology, can read hieroglyphics.
    Still a worthless researcher because he’s supposed to do microbiology work. Special skills
    include using his rubber gloves as a sling to shoot.
    Eppendorf tubes with remarkable accuracy and reading while walking on difficult terrain (our faculty is
    on top of a hill and surrounded by a forest for some reason, there's a lot of difficult terrain here.)
    As of March
    Burcu GUMUSCU

    BSc. Hacettepe University, Biology
    Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University Bilkent, Ankara 06800
    E-mail: gumuscu(at)bilkent.edu.tr
    Phone: +90-312-290 3544

    It is Burcu from Bilkent University, Institute of Material Science and Nanotechnology. I am very proud of being a
    member of Bilkent UNAM Turkey team because I think; here we reflect the real team spirit. Here is a brief
    information about me: I spent every minute of me by listening music! Nothing makes me happy like talking with
    people. I do love sports activities if I can bring down my laziness. Reading books is not for me but reading
    articles has become my pleasure for a long time. As many members of my team, it is my first IGEM participation.
    I hope we will rock the IGEM world with our endless energy and success!
    As of March
    Sinan GUNES

    Senior Student, Bilkent University, Electrical and Electronics Engineering
    Address: 78.Dorm, 146. Room, Bilkent University Bilkent, Ankara 06800
    E-mail:gunes.sinan(at)gmail.com
    Web: http://www.sinangüneş.com.tr
    Phone: +90-312-290 7239

    The picture you look represents me. And that is all.
    By the way, I like playing computer games such as DotA, TF2 and AoE2 and also -while playing-
    I love characterizing other players. In order to do so, I may sometimes change, replace or insert some DNA into computer games,
    I mean the source code. Some calls this cheating, but I swear it is not.
    :)
  • As of March
    Tolga Tarkan OLMEZ
    Senior student from Bilkent University, Molecular Biology and Genetics
    Address: UNAM-Institute of Materials Science and Nanotechnology Bilkent University Bilkent, Ankara 06800
    E-mail:tolgatarkanolmez(at)gmail.com
    Phone: +90-312-290 3544

    I am Tarkan and one of the member of the Bilkent – UNAM – Turkey team. I love watching and playing sports especially
    football and basketball just as usual Turkish guys do. I love dancing but generally too shy to start
    doing it in public. I like talking and meeting new people. Telling jokes and amusing people is my style of
    communication, because that is the best way of telling your good intentions towards others. I participate
    volunteering action a lot in the campus which target poor, rural and disabled children. I love them
    and enjoy spending time with. So, that is it for me now.
As of March
Ufuk DEGİRMENCİ

Sophomore Student, Bilkent University, Molecular Biology and Genetics
Address:61.Dorm, 503.Room, Bilkent University Bilkent, Ankara 06800
E-mail:degirmenci(at)ug.bilkent.edu.tr
Phone: +90-312-290 4277

I’m Ufuk, sophomore student of Bilkent University, Molecular Biology and Genetics Department. Playing squash and Dota are my favourite activities, if I win. Fantastic books fascinate me. First book i read was "One Thousand and One Nights". In IGEM; I like its fun and working style. Everything happens together. I like watching movies when it is with friends. This is my first time being in a research project team, so i am really thankful to my team members for sharing their experience and joy.
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