Latest revision as of 03:46, 22 September 2011

Ranaspumin-2

Back to Parts

Ranaspumin-2 is one of six proteins used by the tungara frog (Engystomops pustulosus, found in Central and South America) to form protein foam nests in which it deposits its eggs. Protein foams are relatively rare in biology, and in this case offer a biocompatible solution to incubation and protection from mechanical destruction, as well as anti-microbial properties.

Protein foam nest from Trinidad ¹

A protein foam nest containing newly hatched frogspawn ²

Pustulosus constructing a foam nest in the wild ²

Structure

Coded for by the gene rsn-2, Ranaspumin-2 (Rsn2) is a monomeric surfactant protein, with an atomic mass of 11kDa. It has a molecular weight of 13415.2 and is comprised of 117 amino acids. In aqueous solution it adopts a tightly folded globular shape, which is uncharacteristic of surfactant proteins. In this 3D arrangement Rsn2 consists of a single helix over a four-stranded sheet, as can be seen in the image below.

Image 1: Ribbons structure of Ranaspumin-2 A: Frontal view B: 90 degree-rotation (Mackenzie, 2009)

This structure is highly unusual for a protein with surfactant properties, and appears to convey no significant amphiphilicity. It is therefore believed that Rsn2 undergoes a significant conformational change when at the air-water interface, in which it will expose hydrophobic groups to the air and hydrophilic groups to the water beneath. (Mackenzie, 2009)

Click here for Ranaspumin-2 sequence.

Function

The protein undergoes a conformational refolding whilst in solution, exhibiting significant surfactant properties at the air-water interface. This property makes it potentially useful when working with biofilms that form at the same phase interface, as it is thought that it may assist in the destruction of the biofilm.

References

Mackenzie et al., 2009. Ranaspumin-2: structure and function of a surfactant protein from the foam nests of a tropical frog. Biophysical Journal, 96, pp. 4984-4992

Kennedy, M.W., Proteins of Frog Foam Nests. Date Accessed: 20/09/2011

Cooper, A., Biofoams and natural protein surfactants Date Accessed: 24/08/1991

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-<h1> Ranaspumin2 </h1>
 <body>
+<h1> Ranaspumin-2</h1>
+<h6><a href="https://2011.igem.org/Team:Glasgow/Parts">Back to Parts</a></h6>
 <p>
-Ranaspumin 2 is one of six proteins used by the tungara frog (<i>Engystomops pustulosus</i>, found in Central and South America) to form protein foam nests in which it deposits its eggs. Protein foams are relatively rare in biology, and in this case offer a biocompatible solution to incubation and protection from mechanical destruction, as well as anti-microbial properties.
+Ranaspumin-2 is one of six proteins used by the tungara frog (<i>Engystomops pustulosus</i>, found in Central and South America) to form protein foam nests in which it deposits its eggs. Protein foams are relatively rare in biology, and in this case offer a biocompatible solution to incubation and protection from mechanical destruction, as well as anti-microbial properties.
 </p>
+<table>
+<tr>
+<td>
+<img src="http://farm7.static.flickr.com/6158/6166712369_6385b3fe65_m.jpg" width="250" height="200">
+<p><font size="1" font color="grey"> Protein foam nest from Trinidad <sup>1</sup></font> </p>
+</td>
+<td>
+<img src="http://www.gla.ac.uk/media/media_55069_en.jpg" width="250" height="195">
+<p> <font size="1" font color="grey"> A protein foam nest containing newly hatched frogspawn <sup>2</sup></p></font>
+</td>
+<td>
+<img src="http://farm7.static.flickr.com/6169/6166704517_2646892173_m.jpg" width="250" height="195">
+<p> <font size="1" font color="grey"> Pustulosus constructing a foam nest in the wild <sup>2</sup></font></p>
+</td>
+</tr>
+</table>
 <h2>Structure </h2>
 <p>
-Coded for by the gene <i>rsn-2</i>, Ranaspumin-2 is a monomeric surfactant protein, with an atomic mass of 11kDa.
+Coded for by the gene <i>rsn-2</i>, Ranaspumin-2 (Rsn2) is a monomeric surfactant protein, with an atomic mass of 11kDa. It has a molecular weight of 13415.2 and is comprised of 117 amino acids. In aqueous solution it adopts a tightly folded globular shape, which is uncharacteristic of surfactant proteins. In this 3D arrangement Rsn2 consists of a single helix over a four-stranded sheet, as can be seen in the image below. </p>
+<img src="http://farm7.static.flickr.com/6155/6167506290_3278200261_m.jpg" alt="Ribbon structure of Ranaspumin-2"/>
+<p> <font size="1" font color="grey"> Image 1: Ribbons structure of Ranaspumin-2 A: Frontal view B: 90 degree-rotation (Mackenzie, 2009) </font> </p>
-Rsn-2(non-His-tagged) Sequence:
+<p>
+This structure is highly unusual for a protein with surfactant properties, and appears to convey no significant amphiphilicity. It is therefore believed that Rsn2 undergoes a significant conformational change when at the air-water interface, in which it will expose hydrophobic groups to the air and hydrophilic groups to the water beneath. (Mackenzie, 2009) </p>
-gtgtgtgaattcgcggccgcttctagagAGGAGGATTACAAAATGTTAATATTAGATGGGGACCT
-ACTAAAGGACCCATCATCATCATCATCACAGCAGCGGCCTGGTGCCGCGCGGCAGCCATATGTTA
-ATATTAGATGGGGACCTACTAAAGGACAAGTTAAAGTTACCGGTCATTGACAATCTGTTTGGTAA
-AGAACTCCTTGACAAGTTTCAAGATGATATTAAGGACAAATATGGGGTGGACACCAAAGACCTTA
-AGATCCTCAAGACATCAGAAGATAAAAGGTTTTACTATGTGTCGGTCGATGCTGGAGATGGCGAG
-AAATGTAAATTCAAGATTAGAAAAGATGTCGATGTTCCAAAGATGGTCGGACGCAAATGTAGGAA
-GGACGATGATGATGATGATGGTAATAAtactagtagcggccgctgcagacacac
-Lowercase Nucleotides: biobrick ends.
-No illegal restriction sites are present.
-Rsn-2(His-tagged)Sequence:
-gtgtgtgaattcgcggccgcttctagagAAGAAGGAGATATACCATGGGCAGCAGCCATCATCAT
-CATCATCACAGCAGCGGCCTGGTGCCGCGCGGCAGCCATATGTTAATATTAGATGGGGACCTACT
-AAAGGACAAGTTAAAGTTACCGGTCATTGACAATCTGTTTGGTAAAGAACTCCTTGACAAGTTTC
-AAGATGATATTAAGGACAAATATGGGGTGGACACCAAAGACCTTAAGATCCTCAAGACATCAGAA
-GATAAAAGGTTTTACTATGTGTCGGTCGATGCTGGAGATGGCGAGAAATGTAAATTCAAGATTAG
-AAAAGATGTCGATGTTCCAAAGATGGTCGGACGCAAATGTAGGAAGGACGATGATGATGATGATG
-G(ttac)TAATAAtactagtagcggccgctgcagacacac
-Lowercase Nucleotides: biobrick ends.
-Note: Last TAATAA is double stop codon that we introduced.
-No illegal restriction sites are present.
-Poly-histidine tag may be used for protein purification, should this be required.
-Protein Product Amino Acid Sequence:
-MGSSHHHHHH SSGLVPR↓GSH MLILDGDLLK DKLKLPVIDN LFGKELLDKF QDDIKDKYGV
-DTKDLKILKT SEDKRFYYVS VDAGDGEKCK FKIRKDVDVP KMVGRKCRKD DDDDDGY
-AA’s, MW= 13415.2
+<a href="https://2011.igem.org/Wiki/2011.igem.org/Team:Glasgow/Ranaspumin2_Sequence"> Click here</a> for Ranaspumin-2 sequence.
-== Function ==
+<h2>Function</h2>
+<p>The protein undergoes a conformational refolding whilst in solution, exhibiting significant surfactant properties at the air-water interface. This property makes it potentially useful when working with biofilms that form at the same phase interface, as it is thought that it may assist in the destruction of the biofilm.</p>
-The protein undergoes a conformational refolding whilst in solution, exhibiting significant surfactant properties at the air-water interface. This property makes it potentially useful when working with biofilms that form at the same phase-interface, as it is thought that it may assist in the destruction of the biofilm.
+<h3> References </h3>
+<ul><p>Mackenzie et al., 2009. Ranaspumin-2: structure and function of a surfactant protein from the foam nests of a tropical frog. Biophysical Journal, 96, pp. 4984-4992</p></ul>
+<ul><p>Kennedy, M.W., <a href="http://www.gla.ac.uk/schools/lifesciences/staff/malcolmkennedy/malcolmkennedy/
+proteinsoffrogfoamnests/">Proteins of Frog Foam Nests.</a> Date Accessed: 20/09/2011</p></ul>
+<ul><p>Cooper, A., <a href=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954283>Biofoams and natural protein surfactants</a> Date Accessed: 24/08/1991</p></ul>
 </html>