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Team:Warsaw/ExpressionAdaptors/Results
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<h2>Results</h2> | <h2>Results</h2> | ||
| - | + | <div class="note">Dry lab results</div> | |
| - | + | <p> | |
| + | Using our software tools we have evolved a pool of candidate expression adaptors from which we have picked six sequences (BBa_K528015 to BBa_K528020)with variable expression levels and synthesized them. This way we have obtained expression adaptors on pSB1C3. All adaptors are under BBa_J23102 promoter in order to measure their strength acording to Synthetic Biology standards. | ||
| + | </p><br><p> | ||
| + | The adaptors have following predicted strengths according to RBSDesigner software: | ||
| + | </p> | ||
| - | + | <style type="text/css"> | |
| + | table.tableizer-table {border: 1px solid #CCC; font-family: Arial, Helvetica, sans-serif; font-size: 12px;} .tableizer-table td {padding: 4px; margin: 3px; border: 1px solid #ccc;} | ||
| + | .tableizer-table th {background-color: #104E8B; color: #FFF; font-weight: bold;} | ||
| + | </style> | ||
<br> | <br> | ||
| - | + | <table class="tableizer-table"> | |
| - | + | <tr class="tableizer-firstrow"><th>Part Name</th><th>Description</th><th>Expression level in thousands of absolute RBSDesigner units</th><th>Expression level as %B0034+YFP</th></tr> <tr><td>BBa_K528015</td><td>Expression Adapters s00_45k</td><td>45</td><td>64,29%</td></tr> <tr><td>BBa_K528016</td><td>Expression Adapters s01_24k</td><td>24</td><td>34,29%</td></tr> <tr><td>BBa_K528017</td><td>expression adapters s02_20k</td><td>20</td><td>28,57%</td></tr> <tr><td>BBa_K528018</td><td>Expression Adapters s06_16k</td><td>16</td><td>22,86%</td></tr> <tr><td>BBa_K528019</td><td>Expression Adapters s05_12k</td><td>12</td><td>17,14%</td></tr> <tr><td>BBa_K528020</td><td>expression adapters s03_65k</td><td>65</td><td>92,86%</td></tr> <tr><td>BBa_K528021</td><td>BBa_K528018+YFP measurement device</td><td>16</td><td>22,86%</td></tr> <tr><td>reference</td><td>BBa_J23102+B0034+YFP (100% reference construct)</td><td>70</td><td>100,00%</td></tr></table> | |
| + | <br> | ||
| + | |||
| + | <div class="note">Wet lab results</div> | ||
| + | <p> | ||
| + | So far we have managed to obtain only BBa_K528021 (BBa_K528018+YFP measurement device) as working part. We have characterized it using fluorimetry in order to see how accurate are RBSCalculator predictions for the BBa_K528018 adaptor. We have obtained following results: | ||
| + | <br> | ||
| + | <style type="text/css"> | ||
| + | table.tableizer-table {border: 1px solid #CCC; font-family: Arial, Helvetica, sans-serif; font-size: 12px;} .tableizer-table td {padding: 4px; margin: 3px; border: 1px solid #ccc;} | ||
| + | .tableizer-table th {background-color: #104E8B; color: #FFF; font-weight: bold;} | ||
| + | </style> | ||
| + | |||
| + | <table class="tableizer-table"> | ||
| + | <tr class="tableizer-firstrow"><th>Part Name</th><th>Description</th><th>Expression level as %B0034+YFP</th><th>Std Dev.</th></tr> <tr><td>BBa_K528021</td><td>BBa_K528018+YFP measurement device</td><td>20,37%</td><td>3,21%</td></tr> <tr><td>reference</td><td>Bba_J23102+B0034+YFP (100% reference construct)</td><td>100,00%</td><td>2,61%</td></tr></table> | ||
| - | |||
<br> | <br> | ||
| + | As you can see prediction is quite accurate. Clonning of other fluorescent proteins and testing the rest of expression adaptors is still to be done. | ||
| + | </p> | ||
</html> | </html> | ||
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Latest revision as of 00:09, 22 September 2011
Results
Dry lab results
Using our software tools we have evolved a pool of candidate expression adaptors from which we have picked six sequences (BBa_K528015 to BBa_K528020)with variable expression levels and synthesized them. This way we have obtained expression adaptors on pSB1C3. All adaptors are under BBa_J23102 promoter in order to measure their strength acording to Synthetic Biology standards.
The adaptors have following predicted strengths according to RBSDesigner software:
| Part Name | Description | Expression level in thousands of absolute RBSDesigner units | Expression level as %B0034+YFP |
|---|---|---|---|
| BBa_K528015 | Expression Adapters s00_45k | 45 | 64,29% |
| BBa_K528016 | Expression Adapters s01_24k | 24 | 34,29% |
| BBa_K528017 | expression adapters s02_20k | 20 | 28,57% |
| BBa_K528018 | Expression Adapters s06_16k | 16 | 22,86% |
| BBa_K528019 | Expression Adapters s05_12k | 12 | 17,14% |
| BBa_K528020 | expression adapters s03_65k | 65 | 92,86% |
| BBa_K528021 | BBa_K528018+YFP measurement device | 16 | 22,86% |
| reference | BBa_J23102+B0034+YFP (100% reference construct) | 70 | 100,00% |
Wet lab results
So far we have managed to obtain only BBa_K528021 (BBa_K528018+YFP measurement device) as working part. We have characterized it using fluorimetry in order to see how accurate are RBSCalculator predictions for the BBa_K528018 adaptor. We have obtained following results:
| Part Name | Description | Expression level as %B0034+YFP | Std Dev. |
|---|---|---|---|
| BBa_K528021 | BBa_K528018+YFP measurement device | 20,37% | 3,21% |
| reference | Bba_J23102+B0034+YFP (100% reference construct) | 100,00% | 2,61% |
As you can see prediction is quite accurate. Clonning of other fluorescent proteins and testing the rest of expression adaptors is still to be done.
